Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 AC080038.1-201ENST00000611274 1154 ntBASIC20.43■□□□□ 0.86
PDGFAP04085 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PDGFAP04085 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.42■□□□□ 0.86
PDGFAP04085 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.42■□□□□ 0.86
PDGFAP04085 DUX4L4-201ENST00000566884 1269 ntBASIC20.42■□□□□ 0.86
PDGFAP04085 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PDGFAP04085 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.42■□□□□ 0.86
PDGFAP04085 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PDGFAP04085 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDGFAP04085 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.41■□□□□ 0.86
PDGFAP04085 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.41■□□□□ 0.86
PDGFAP04085 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 AC006015.1-201ENST00000429970 570 ntBASIC20.41■□□□□ 0.86
PDGFAP04085 AP005435.1-201ENST00000529293 1178 ntBASIC20.41■□□□□ 0.86
PDGFAP04085 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.41■□□□□ 0.86
PDGFAP04085 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.41■□□□□ 0.86
PDGFAP04085 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.41■□□□□ 0.86
PDGFAP04085 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.41■□□□□ 0.86
PDGFAP04085 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.41■□□□□ 0.86
PDGFAP04085 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.41■□□□□ 0.86
PDGFAP04085 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDGFAP04085 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDGFAP04085 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PDGFAP04085 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.4■□□□□ 0.86
PDGFAP04085 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDGFAP04085 RAP2CP1-201ENST00000605103 478 ntBASIC20.4■□□□□ 0.86
PDGFAP04085 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.39■□□□□ 0.85
PDGFAP04085 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFAP04085 FP325331.1-202ENST00000623531 1380 ntBASIC20.39■□□□□ 0.85
PDGFAP04085 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFAP04085 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFAP04085 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFAP04085 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PDGFAP04085 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
PDGFAP04085 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PDGFAP04085 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFAP04085 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFAP04085 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFAP04085 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFAP04085 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
PDGFAP04085 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFAP04085 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFAP04085 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.38■□□□□ 0.85
PDGFAP04085 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PDGFAP04085 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFAP04085 CDCA4P2-201ENST00000441182 718 ntBASIC20.38■□□□□ 0.85
PDGFAP04085 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.38■□□□□ 0.85
PDGFAP04085 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.38■□□□□ 0.85
PDGFAP04085 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFAP04085 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFAP04085 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFAP04085 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFAP04085 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.37■□□□□ 0.85
PDGFAP04085 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
PDGFAP04085 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
PDGFAP04085 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PDGFAP04085 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.37■□□□□ 0.85
PDGFAP04085 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PDGFAP04085 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFAP04085 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.36■□□□□ 0.85
PDGFAP04085 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PDGFAP04085 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.36■□□□□ 0.85
PDGFAP04085 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.36■□□□□ 0.85
PDGFAP04085 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.36■□□□□ 0.85
PDGFAP04085 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
PDGFAP04085 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFAP04085 AC073111.5-205ENST00000641717 521 ntBASIC20.36■□□□□ 0.85
PDGFAP04085 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFAP04085 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
PDGFAP04085 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFAP04085 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFAP04085 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms