Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PRKNO60260 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PRKNO60260 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PRKNO60260 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
PRKNO60260 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
PRKNO60260 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.39■□□□□ 0.86
PRKNO60260 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.39■□□□□ 0.86
PRKNO60260 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRKNO60260 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
PRKNO60260 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRKNO60260 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
PRKNO60260 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.39■□□□□ 0.85
PRKNO60260 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.39■□□□□ 0.85
PRKNO60260 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
PRKNO60260 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.39■□□□□ 0.85
PRKNO60260 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRKNO60260 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRKNO60260 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRKNO60260 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PRKNO60260 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.38■□□□□ 0.85
PRKNO60260 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.38■□□□□ 0.85
PRKNO60260 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.38■□□□□ 0.85
PRKNO60260 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.38■□□□□ 0.85
PRKNO60260 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PRKNO60260 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.38■□□□□ 0.85
PRKNO60260 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.38■□□□□ 0.85
PRKNO60260 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.38■□□□□ 0.85
PRKNO60260 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
PRKNO60260 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.38■□□□□ 0.85
PRKNO60260 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PRKNO60260 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.37■□□□□ 0.85
PRKNO60260 IGHV3-19-201ENST00000521488 291 ntBASIC20.37■□□□□ 0.85
PRKNO60260 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.37■□□□□ 0.85
PRKNO60260 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
PRKNO60260 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.37■□□□□ 0.85
PRKNO60260 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PRKNO60260 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRKNO60260 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PRKNO60260 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.36■□□□□ 0.85
PRKNO60260 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.36■□□□□ 0.85
PRKNO60260 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.36■□□□□ 0.85
PRKNO60260 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PRKNO60260 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRKNO60260 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PRKNO60260 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.36■□□□□ 0.85
PRKNO60260 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.36■□□□□ 0.85
PRKNO60260 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PRKNO60260 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.36■□□□□ 0.85
PRKNO60260 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.36■□□□□ 0.85
PRKNO60260 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PRKNO60260 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.35■□□□□ 0.85
PRKNO60260 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PRKNO60260 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PRKNO60260 IRS3P-201ENST00000223076 1006 ntBASIC20.35■□□□□ 0.85
PRKNO60260 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.35■□□□□ 0.85
PRKNO60260 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.35■□□□□ 0.85
PRKNO60260 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.35■□□□□ 0.85
PRKNO60260 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.35■□□□□ 0.85
PRKNO60260 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PRKNO60260 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PRKNO60260 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PRKNO60260 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PRKNO60260 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PRKNO60260 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
PRKNO60260 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
PRKNO60260 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.34■□□□□ 0.85
PRKNO60260 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PRKNO60260 AP005435.1-201ENST00000529293 1178 ntBASIC20.34■□□□□ 0.85
PRKNO60260 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.34■□□□□ 0.85
PRKNO60260 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 AC068473.5-201ENST00000616428 2072 ntBASIC20.34■□□□□ 0.85
PRKNO60260 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PRKNO60260 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PRKNO60260 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.33■□□□□ 0.85
PRKNO60260 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.33■□□□□ 0.85
PRKNO60260 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.33■□□□□ 0.85
PRKNO60260 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PRKNO60260 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.33■□□□□ 0.85
PRKNO60260 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms