Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 OSBPL7-202ENST00000392507 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CLK1P49759 HJURP-204ENST00000432087 3027 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
CLK1P49759 MDGA1-207ENST00000505425 3021 ntTSL 5 BASIC12.32□□□□□ -0.44
CLK1P49759 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC12.32□□□□□ -0.44
CLK1P49759 ZKSCAN1-202ENST00000426572 2011 ntTSL 2 BASIC12.32□□□□□ -0.44
CLK1P49759 TBC1D16-202ENST00000340848 4244 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CLK1P49759 NCAM1-225ENST00000618266 5937 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
CLK1P49759 TRMT10B-203ENST00000377754 1881 ntTSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 UBXN4-201ENST00000272638 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 AC245100.6-201ENST00000427169 1918 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 TMCC2-208ENST00000545499 3339 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 MIR22HG-208ENST00000574306 2626 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 FAM200B-223ENST00000622362 4377 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 HERC2P3-204ENST00000426501 5995 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 EYA3-202ENST00000373864 2459 ntTSL 5 BASIC12.31□□□□□ -0.44
CLK1P49759 NAB1-203ENST00000409641 2472 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 RIC8A-203ENST00000526104 3703 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC12.31□□□□□ -0.44
CLK1P49759 AC092115.1-201ENST00000566277 1402 ntBASIC12.31□□□□□ -0.44
CLK1P49759 MYO10-210ENST00000513610 8038 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 RGL4-201ENST00000290691 2885 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 AC091046.1-201ENST00000331871 207 ntBASIC12.31□□□□□ -0.44
CLK1P49759 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 OR7E115P-201ENST00000382617 1024 ntBASIC12.31□□□□□ -0.44
CLK1P49759 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CLK1P49759 HIST2H2BA-201ENST00000412169 381 ntBASIC12.31□□□□□ -0.44
CLK1P49759 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC12.31□□□□□ -0.44
CLK1P49759 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.31□□□□□ -0.44
CLK1P49759 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC12.31□□□□□ -0.44
CLK1P49759 RPL7P35-201ENST00000446943 740 ntBASIC12.31□□□□□ -0.44
CLK1P49759 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC12.31□□□□□ -0.44
CLK1P49759 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC12.31□□□□□ -0.44
CLK1P49759 RNA5SP406-201ENST00000516106 112 ntBASIC12.31□□□□□ -0.44
CLK1P49759 RN7SL357P-201ENST00000581065 298 ntBASIC12.31□□□□□ -0.44
CLK1P49759 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.31□□□□□ -0.44
CLK1P49759 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.31□□□□□ -0.44
CLK1P49759 AC007881.3-201ENST00000608897 607 ntBASIC12.31□□□□□ -0.44
CLK1P49759 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC12.31□□□□□ -0.44
CLK1P49759 SUCLG2-201ENST00000307227 2352 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 ZNF461-201ENST00000360357 2361 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 BDNF-218ENST00000533246 4000 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 KCND3-203ENST00000369697 7396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CLK1P49759 NT5E-201ENST00000257770 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 AL590483.3-201ENST00000623669 3580 ntBASIC12.31□□□□□ -0.44
CLK1P49759 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 LINC00662-206ENST00000590523 2053 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CLK1P49759 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 AC022098.1-201ENST00000588387 2861 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 NT5C3A-214ENST00000620705 1704 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 SLC25A25-201ENST00000373064 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC12.31□□□□□ -0.44
CLK1P49759 ZNF221-205ENST00000622072 2102 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 G2E3-202ENST00000438909 2334 ntTSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 AC135012.1-201ENST00000563931 7430 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CLK1P49759 TRIM37-202ENST00000393065 3548 ntTSL 2 BASIC12.31□□□□□ -0.44
CLK1P49759 ZNF25-201ENST00000302609 4139 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 PMEPA1-205ENST00000395816 4519 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 NR1D1-201ENST00000246672 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 ASTN1-203ENST00000367657 4187 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 PAK5-203ENST00000378429 4780 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 REPS1-205ENST00000415951 2424 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC12.3□□□□□ -0.44
CLK1P49759 PLEKHA6-202ENST00000414478 5091 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 PNPLA6-203ENST00000450331 4457 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 TTC16-201ENST00000373289 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 TRERF1-202ENST00000354325 4138 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC12.3□□□□□ -0.44
CLK1P49759 Z69890.1-201ENST00000382990 339 ntBASIC12.3□□□□□ -0.44
CLK1P49759 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CLK1P49759 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC12.3□□□□□ -0.44
CLK1P49759 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12.3□□□□□ -0.44
CLK1P49759 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC12.3□□□□□ -0.44
CLK1P49759 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC12.3□□□□□ -0.44
CLK1P49759 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC12.3□□□□□ -0.44
CLK1P49759 RN7SL23P-201ENST00000484055 275 ntBASIC12.3□□□□□ -0.44
CLK1P49759 EEF1GP8-201ENST00000506566 1154 ntBASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms