RNA–Protein interactions for RNA: ENST00000533246.5

BDNF-218, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 4,000 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-218ENST00000533246 DCAF8L2P0C7V8 631 aa21.7■■□□□ 1.06
BDNF-218ENST00000533246 NISCHQ9Y2I1 1504 aa21.42■■□□□ 1.02
BDNF-218ENST00000533246 SUPT5HO00267 1087 aaKnown RBP20.93■□□□□ 0.94
BDNF-218ENST00000533246 SHROOM4Q9ULL8 1493 aa20.75■□□□□ 0.91
BDNF-218ENST00000533246 PELP1Q8IZL8 1130 aaKnown RBP20.22■□□□□ 0.83
BDNF-218ENST00000533246 EHMT2Q96KQ7 1210 aa20.21■□□□□ 0.83
BDNF-218ENST00000533246 MYT1Q01538 1121 aa19.96■□□□□ 0.79
BDNF-218ENST00000533246 FAM9AQ8IZU1 332 aaPredicted RBP19.72■□□□□ 0.75
BDNF-218ENST00000533246 PCGF6Q9BYE7 350 aa19.58■□□□□ 0.73
BDNF-218ENST00000533246 TTBK1Q5TCY1 1321 aaPredicted RBP19.46■□□□□ 0.71
BDNF-218ENST00000533246 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
BDNF-218ENST00000533246 RANGAP1P46060 587 aaPredicted RBP19.16■□□□□ 0.66
BDNF-218ENST00000533246 PPARGC1BQ86YN6 1023 aaKnown RBP19.07■□□□□ 0.64
BDNF-218ENST00000533246 LOC105371045A0A1W2PR82 267 aa19■□□□□ 0.63
BDNF-218ENST00000533246 APLP2Q06481 763 aa19■□□□□ 0.63
BDNF-218ENST00000533246 CHIC1Q5VXU3 224 aa18.91■□□□□ 0.62
BDNF-218ENST00000533246 UBTFP17480 764 aaKnown RBP18.82■□□□□ 0.6
BDNF-218ENST00000533246 CCER1Q8TC90 406 aaPredicted RBP18.82■□□□□ 0.6
BDNF-218ENST00000533246 ATP1B4Q9UN42 357 aaPredicted RBP18.66■□□□□ 0.58
BDNF-218ENST00000533246 HRCP23327 699 aa18.64■□□□□ 0.57
BDNF-218ENST00000533246 TRIM26Q12899 539 aaPredicted RBP18.57■□□□□ 0.56
BDNF-218ENST00000533246 ZEB1P37275 1124 aaPredicted RBP18.55■□□□□ 0.56
BDNF-218ENST00000533246 YTHDC1Q96MU7 727 aaKnown RBP18.46■□□□□ 0.55
BDNF-218ENST00000533246 ERICH6Q7L0X2 663 aa18.37■□□□□ 0.53
BDNF-218ENST00000533246 CENPBP07199 599 aaPredicted RBP18.35■□□□□ 0.53
BDNF-218ENST00000533246 ITGAEP38570 1179 aa18.33■□□□□ 0.53
BDNF-218ENST00000533246 HNRNPUL2Q1KMD3 747 aaKnown RBP18.32■□□□□ 0.52
BDNF-218ENST00000533246 PABPN1Q86U42 306 aaKnown RBP eCLIP18.3■□□□□ 0.52
BDNF-218ENST00000533246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.3■□□□□ 0.52
BDNF-218ENST00000533246 ABCC9O60706 1549 aa18.28■□□□□ 0.52
BDNF-218ENST00000533246 SCAF1Q9H7N4 1312 aaKnown RBP18.1■□□□□ 0.49
BDNF-218ENST00000533246 BCL11AQ9H165 835 aa18.07■□□□□ 0.48
BDNF-218ENST00000533246 GTF3C3Q9Y5Q9 886 aa17.96■□□□□ 0.47
BDNF-218ENST00000533246 CNGB1Q14028 1251 aaPredicted RBP17.93■□□□□ 0.46
BDNF-218ENST00000533246 PRKCSHP14314 528 aaPredicted RBP17.91■□□□□ 0.46
BDNF-218ENST00000533246 DIEXFQ68CQ4 756 aaKnown RBP17.89■□□□□ 0.45
BDNF-218ENST00000533246 POLR3GLQ9BT43 218 aa17.82■□□□□ 0.44
BDNF-218ENST00000533246 NEFLP07196 543 aa17.79■□□□□ 0.44
BDNF-218ENST00000533246 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
BDNF-218ENST00000533246 FAM50AQ14320 339 aaKnown RBP17.74■□□□□ 0.43
BDNF-218ENST00000533246 CSRNP3Q8WYN3 585 aa17.71■□□□□ 0.43
BDNF-218ENST00000533246 ACIN1Q9UKV3 1341 aaKnown RBP17.7■□□□□ 0.42
BDNF-218ENST00000533246 NEUROD1Q13562 356 aa17.69■□□□□ 0.42
BDNF-218ENST00000533246 P3H3Q8IVL6 736 aa17.66■□□□□ 0.42
BDNF-218ENST00000533246 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
BDNF-218ENST00000533246 SCRIBQ14160 1630 aa17.6■□□□□ 0.41
BDNF-218ENST00000533246 MYT1LQ9UL68 1186 aa17.57■□□□□ 0.4
BDNF-218ENST00000533246 ARID3CA6NKF2 412 aa17.56■□□□□ 0.4
BDNF-218ENST00000533246 TRIM52Q96A61 297 aa17.5■□□□□ 0.39
BDNF-218ENST00000533246 ZNF316A6NFI3 1004 aaPredicted RBP17.48■□□□□ 0.39
BDNF-218ENST00000533246 BCANQ96GW7 911 aa17.47■□□□□ 0.39
BDNF-218ENST00000533246 FBLN2P98095 1184 aa17.41■□□□□ 0.38
BDNF-218ENST00000533246 ANP32EQ9BTT0 268 aa17.39■□□□□ 0.37
BDNF-218ENST00000533246 ZNF326Q5BKZ1 582 aaKnown RBP17.38■□□□□ 0.37
BDNF-218ENST00000533246 DCAF1Q9Y4B6 1507 aa17.36■□□□□ 0.37
BDNF-218ENST00000533246 RSF1Q96T23 1441 aaPredicted RBP17.35■□□□□ 0.37
BDNF-218ENST00000533246 SLC24A1O60721 1099 aa17.28■□□□□ 0.36
BDNF-218ENST00000533246 EIF5BO60841 1220 aaKnown RBP17.25■□□□□ 0.35
BDNF-218ENST00000533246 SLC4A1APQ9BWU0 796 aaKnown RBP17.23■□□□□ 0.35
BDNF-218ENST00000533246 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
BDNF-218ENST00000533246 ANP32CO43423 234 aa17.2■□□□□ 0.34
BDNF-218ENST00000533246 ZNF777Q9ULD5 760 aaPredicted RBP17.17■□□□□ 0.34
BDNF-218ENST00000533246 HIRIP3Q9BW71 556 aaPredicted RBP17.17■□□□□ 0.34
BDNF-218ENST00000533246 DDX10Q13206 875 aaKnown RBP17.15■□□□□ 0.34
BDNF-218ENST00000533246 CECR2Q9BXF3 1484 aa17.12■□□□□ 0.33
BDNF-218ENST00000533246 MIER1Q8N108 512 aa17.12■□□□□ 0.33
BDNF-218ENST00000533246 CHIC2Q9UKJ5 165 aa17.12■□□□□ 0.33
BDNF-218ENST00000533246 CLIP1P30622 1438 aa17.03■□□□□ 0.32
BDNF-218ENST00000533246 CEP162Q5TB80 1403 aa17.01■□□□□ 0.31
BDNF-218ENST00000533246 DAXXQ9UER7 740 aaPredicted RBP17.01■□□□□ 0.31
BDNF-218ENST00000533246 FKBP8Q14318 412 aa16.96■□□□□ 0.31
BDNF-218ENST00000533246 TONSLQ96HA7 1378 aa16.93■□□□□ 0.3
BDNF-218ENST00000533246 CLSPNQ9HAW4 1339 aa16.93■□□□□ 0.3
BDNF-218ENST00000533246 RTL5Q5HYW3 569 aaPredicted RBP16.92■□□□□ 0.3
BDNF-218ENST00000533246 HNRNPUQ00839 825 aaKnown RBP eCLIP16.91■□□□□ 0.3
BDNF-218ENST00000533246 WRNQ14191 1432 aaPredicted RBP eCLIP16.91■□□□□ 0.3
BDNF-218ENST00000533246 FAM9BQ8IZU0 186 aa16.91■□□□□ 0.3
BDNF-218ENST00000533246 SALL2Q9Y467 1007 aaPredicted RBP16.9■□□□□ 0.3
BDNF-218ENST00000533246 SOGA1O94964 1423 aa16.9■□□□□ 0.3
BDNF-218ENST00000533246 CCDC136Q96JN2 1154 aa16.89■□□□□ 0.29
BDNF-218ENST00000533246 SENP3-EIF4A1A0A087X0R7 540 aa16.89■□□□□ 0.29
BDNF-218ENST00000533246 RRP7BPQ9NSQ0 103 aa16.88■□□□□ 0.29
BDNF-218ENST00000533246 ANO8Q9HCE9 1232 aaPredicted RBP16.87■□□□□ 0.29
BDNF-218ENST00000533246 CDK11AQ9UQ88 783 aaPredicted RBP16.86■□□□□ 0.29
BDNF-218ENST00000533246 IRX6P78412 446 aaPredicted RBP16.83■□□□□ 0.28
BDNF-218ENST00000533246 GLIPR1L2Q4G1C9 344 aa16.82■□□□□ 0.28
BDNF-218ENST00000533246 MTUS2Q5JR59 1369 aa16.82■□□□□ 0.28
BDNF-218ENST00000533246 TNIKQ9UKE5 1360 aa16.81■□□□□ 0.28
BDNF-218ENST00000533246 SIN3AQ96ST3 1273 aa16.81■□□□□ 0.28
BDNF-218ENST00000533246 KDM2AQ9Y2K7 1162 aa16.81■□□□□ 0.28
BDNF-218ENST00000533246 GOLGA3Q08378 1498 aa16.8■□□□□ 0.28
BDNF-218ENST00000533246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.8■□□□□ 0.28
BDNF-218ENST00000533246 RB1CC1Q8TDY2 1594 aa16.8■□□□□ 0.28
BDNF-218ENST00000533246 RTN4Q9NQC3 1192 aaKnown RBP16.79■□□□□ 0.28
BDNF-218ENST00000533246 MROH2BQ7Z745 1585 aa16.79■□□□□ 0.28
BDNF-218ENST00000533246 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.78■□□□□ 0.28
BDNF-218ENST00000533246 NACADO15069 1562 aa16.73■□□□□ 0.27
BDNF-218ENST00000533246 BAZ1BQ9UIG0 1483 aaKnown RBP16.72■□□□□ 0.27
BDNF-218ENST00000533246 EEA1Q15075 1411 aa16.72■□□□□ 0.27
BDNF-218ENST00000533246 CHGAP10645 457 aaKnown RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms