Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COMMD3Q9UBI1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 AC092667.1-201ENST00000434301 2586 ntBASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.3■□□□□ 0.68
COMMD3Q9UBI1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 AL592295.1-201ENST00000400984 884 ntBASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.29■□□□□ 0.68
COMMD3Q9UBI1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 AC016575.1-201ENST00000607026 382 ntBASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COMMD3Q9UBI1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COMMD3Q9UBI1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COMMD3Q9UBI1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COMMD3Q9UBI1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COMMD3Q9UBI1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 RPS2P35-201ENST00000443417 897 ntBASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COMMD3Q9UBI1 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 RPS2P7-201ENST00000447334 885 ntBASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COMMD3Q9UBI1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms