Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.17■□□□□ 0.82
LRFN1Q9P244 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRFN1Q9P244 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 AL031602.1-201ENST00000633169 911 ntBASIC20.16■□□□□ 0.82
LRFN1Q9P244 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRFN1Q9P244 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.16■□□□□ 0.82
LRFN1Q9P244 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRFN1Q9P244 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 AC087239.1-201ENST00000622671 572 ntBASIC20.15■□□□□ 0.82
LRFN1Q9P244 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 ANOS2P-203ENST00000472227 1816 ntBASIC20.15■□□□□ 0.82
LRFN1Q9P244 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRFN1Q9P244 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.15■□□□□ 0.82
LRFN1Q9P244 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRFN1Q9P244 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRFN1Q9P244 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRFN1Q9P244 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.14■□□□□ 0.81
LRFN1Q9P244 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRFN1Q9P244 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRFN1Q9P244 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.14■□□□□ 0.81
LRFN1Q9P244 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LRFN1Q9P244 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.14■□□□□ 0.81
LRFN1Q9P244 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.14■□□□□ 0.81
LRFN1Q9P244 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRFN1Q9P244 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.14■□□□□ 0.81
LRFN1Q9P244 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.14■□□□□ 0.81
LRFN1Q9P244 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.13■□□□□ 0.81
LRFN1Q9P244 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.13■□□□□ 0.81
LRFN1Q9P244 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.13■□□□□ 0.81
LRFN1Q9P244 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.13■□□□□ 0.81
LRFN1Q9P244 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.13■□□□□ 0.81
LRFN1Q9P244 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LRFN1Q9P244 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.13■□□□□ 0.81
LRFN1Q9P244 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRFN1Q9P244 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
LRFN1Q9P244 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
LRFN1Q9P244 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.12■□□□□ 0.81
LRFN1Q9P244 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.12■□□□□ 0.81
LRFN1Q9P244 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.12■□□□□ 0.81
LRFN1Q9P244 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
LRFN1Q9P244 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.12■□□□□ 0.81
LRFN1Q9P244 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LRFN1Q9P244 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.12■□□□□ 0.81
LRFN1Q9P244 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LRFN1Q9P244 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
LRFN1Q9P244 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LRFN1Q9P244 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
LRFN1Q9P244 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
LRFN1Q9P244 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.11■□□□□ 0.81
LRFN1Q9P244 LINC02228-203ENST00000641970 1355 ntBASIC20.11■□□□□ 0.81
LRFN1Q9P244 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.11■□□□□ 0.81
LRFN1Q9P244 AC092068.2-201ENST00000590491 1708 ntBASIC20.11■□□□□ 0.81
LRFN1Q9P244 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRFN1Q9P244 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms