Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL21A1Q96P44 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL21A1Q96P44 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL21A1Q96P44 ECEL1P1-201ENST00000373592 1742 ntBASIC20.7■□□□□ 0.9
COL21A1Q96P44 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.7■□□□□ 0.9
COL21A1Q96P44 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 MIR4466-201ENST00000606121 54 ntBASIC20.69■□□□□ 0.9
COL21A1Q96P44 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL21A1Q96P44 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.69■□□□□ 0.9
COL21A1Q96P44 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 SRD5A1P1-201ENST00000442297 786 ntBASIC20.68■□□□□ 0.9
COL21A1Q96P44 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.68■□□□□ 0.9
COL21A1Q96P44 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.68■□□□□ 0.9
COL21A1Q96P44 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 AC008406.3-201ENST00000620001 1374 ntBASIC20.68■□□□□ 0.9
COL21A1Q96P44 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.68■□□□□ 0.9
COL21A1Q96P44 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 ESRRAP2-201ENST00000418437 1549 ntBASIC20.68■□□□□ 0.9
COL21A1Q96P44 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL21A1Q96P44 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.67■□□□□ 0.9
COL21A1Q96P44 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL21A1Q96P44 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.66■□□□□ 0.9
COL21A1Q96P44 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL21A1Q96P44 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL21A1Q96P44 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL21A1Q96P44 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.65■□□□□ 0.9
COL21A1Q96P44 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL21A1Q96P44 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.65■□□□□ 0.9
COL21A1Q96P44 AL136116.3-201ENST00000402907 1138 ntBASIC20.65■□□□□ 0.9
COL21A1Q96P44 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.65■□□□□ 0.9
COL21A1Q96P44 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL21A1Q96P44 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL21A1Q96P44 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL21A1Q96P44 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL21A1Q96P44 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL21A1Q96P44 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL21A1Q96P44 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL21A1Q96P44 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.64■□□□□ 0.89
COL21A1Q96P44 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL21A1Q96P44 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL21A1Q96P44 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.64■□□□□ 0.89
COL21A1Q96P44 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL21A1Q96P44 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL21A1Q96P44 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms