Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 AC099791.2-201ENST00000605725 427 ntBASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 AC241377.3-202ENST00000626088 1088 ntBASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 AC241585.3-202ENST00000628937 1088 ntBASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 AC245100.8-202ENST00000629247 1058 ntBASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF549Q6P9A3 LINC01960-201ENST00000563759 1884 ntBASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF549Q6P9A3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF549Q6P9A3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF549Q6P9A3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF549Q6P9A3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 MIR4466-201ENST00000606121 54 ntBASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF549Q6P9A3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF549Q6P9A3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF549Q6P9A3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 pRNA.6-201ENST00000610482 90 ntBASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 pRNA.5-201ENST00000612139 90 ntBASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 pRNA.11-201ENST00000618423 90 ntBASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 pRNA.13-201ENST00000619112 90 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms