Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.78■□□□□ 0.76
LSM3P62310 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 AC087742.1-201ENST00000575880 1738 ntBASIC19.78■□□□□ 0.76
LSM3P62310 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM3P62310 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.78■□□□□ 0.76
LSM3P62310 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM3P62310 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LSM3P62310 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.77■□□□□ 0.76
LSM3P62310 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LSM3P62310 AL391422.3-201ENST00000603791 2761 ntBASIC19.77■□□□□ 0.76
LSM3P62310 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.77■□□□□ 0.76
LSM3P62310 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LSM3P62310 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM3P62310 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LSM3P62310 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LSM3P62310 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.77■□□□□ 0.75
LSM3P62310 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LSM3P62310 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.76■□□□□ 0.75
LSM3P62310 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LSM3P62310 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM3P62310 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LSM3P62310 RP9P-202ENST00000450133 1212 ntBASIC19.76■□□□□ 0.75
LSM3P62310 AC093536.1-201ENST00000569153 554 ntBASIC19.76■□□□□ 0.75
LSM3P62310 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM3P62310 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
LSM3P62310 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LSM3P62310 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM3P62310 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM3P62310 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM3P62310 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LSM3P62310 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.75■□□□□ 0.75
LSM3P62310 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
LSM3P62310 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 KRT18P10-201ENST00000388836 1287 ntBASIC19.75■□□□□ 0.75
LSM3P62310 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.75■□□□□ 0.75
LSM3P62310 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM3P62310 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM3P62310 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
LSM3P62310 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.74■□□□□ 0.75
LSM3P62310 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
LSM3P62310 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM3P62310 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.74■□□□□ 0.75
LSM3P62310 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.74■□□□□ 0.75
LSM3P62310 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LSM3P62310 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LSM3P62310 AL353803.4-201ENST00000565882 1934 ntBASIC19.73■□□□□ 0.75
LSM3P62310 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM3P62310 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM3P62310 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.73■□□□□ 0.75
LSM3P62310 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LSM3P62310 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LSM3P62310 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.73■□□□□ 0.75
LSM3P62310 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LSM3P62310 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LSM3P62310 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM3P62310 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
LSM3P62310 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LSM3P62310 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.72■□□□□ 0.75
LSM3P62310 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
LSM3P62310 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LSM3P62310 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.71■□□□□ 0.75
LSM3P62310 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LSM3P62310 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM3P62310 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LSM3P62310 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM3P62310 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LSM3P62310 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms