Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CDH3P22223 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH3P22223 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH3P22223 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH3P22223 ZNRF2P3-201ENST00000424200 374 ntBASIC21.41■■□□□ 1.02
CDH3P22223 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH3P22223 AC233992.3-201ENST00000607491 485 ntBASIC21.41■■□□□ 1.02
CDH3P22223 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH3P22223 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CDH3P22223 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH3P22223 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDH3P22223 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.41■■□□□ 1.02
CDH3P22223 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH3P22223 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH3P22223 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH3P22223 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH3P22223 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH3P22223 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.4■■□□□ 1.02
CDH3P22223 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.4■■□□□ 1.02
CDH3P22223 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.4■■□□□ 1.02
CDH3P22223 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH3P22223 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH3P22223 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.4■■□□□ 1.02
CDH3P22223 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.4■■□□□ 1.02
CDH3P22223 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH3P22223 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDH3P22223 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDH3P22223 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.39■■□□□ 1.02
CDH3P22223 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
CDH3P22223 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.39■■□□□ 1.02
CDH3P22223 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.39■■□□□ 1.01
CDH3P22223 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.39■■□□□ 1.01
CDH3P22223 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDH3P22223 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.38■■□□□ 1.01
CDH3P22223 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.38■■□□□ 1.01
CDH3P22223 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.38■■□□□ 1.01
CDH3P22223 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.38■■□□□ 1.01
CDH3P22223 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.38■■□□□ 1.01
CDH3P22223 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CDH3P22223 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDH3P22223 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH3P22223 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDH3P22223 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH3P22223 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.37■■□□□ 1.01
CDH3P22223 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.37■■□□□ 1.01
CDH3P22223 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
CDH3P22223 AC126544.1-201ENST00000580842 1059 ntBASIC21.37■■□□□ 1.01
CDH3P22223 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH3P22223 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDH3P22223 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CDH3P22223 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CDH3P22223 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.36■■□□□ 1.01
CDH3P22223 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH3P22223 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.36■■□□□ 1.01
CDH3P22223 SLC47A1P1-202ENST00000449666 945 ntBASIC21.36■■□□□ 1.01
CDH3P22223 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH3P22223 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CDH3P22223 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH3P22223 AL353803.4-201ENST00000565882 1934 ntBASIC21.35■■□□□ 1.01
CDH3P22223 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
CDH3P22223 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.35■■□□□ 1.01
CDH3P22223 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CDH3P22223 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH3P22223 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CDH3P22223 DUSP8P5-201ENST00000422884 1815 ntBASIC21.34■■□□□ 1.01
CDH3P22223 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms