Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.52□□□□□ -0.41
CLK1P49759 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 POLD4-208ENST00000532830 904 ntTSL 3 BASIC12.52□□□□□ -0.41
CLK1P49759 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC12.52□□□□□ -0.41
CLK1P49759 SNORD3B-1-201ENST00000577988 758 ntBASIC12.52□□□□□ -0.41
CLK1P49759 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.52□□□□□ -0.41
CLK1P49759 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC12.52□□□□□ -0.41
CLK1P49759 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC12.52□□□□□ -0.41
CLK1P49759 AC011495.2-201ENST00000600665 360 ntTSL 5 BASIC12.52□□□□□ -0.41
CLK1P49759 AC012073.1-201ENST00000606114 1108 ntBASIC12.52□□□□□ -0.41
CLK1P49759 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC12.52□□□□□ -0.41
CLK1P49759 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC12.52□□□□□ -0.41
CLK1P49759 NWD1-206ENST00000552788 6964 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
CLK1P49759 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 CDH4-203ENST00000614565 6513 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 CACNA1F-201ENST00000323022 6037 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 PDXDC2P-206ENST00000534700 1315 ntBASIC12.52□□□□□ -0.41
CLK1P49759 BCL2L11-206ENST00000393256 5086 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 BTG1-201ENST00000256015 4680 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 GREM2-201ENST00000318160 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 MYO7A-201ENST00000409619 7106 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 CCDC114-201ENST00000315396 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 LRTM2-208ENST00000543818 3986 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CLK1P49759 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLK1P49759 GRM8-201ENST00000339582 4057 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
CLK1P49759 STRA6-201ENST00000323940 2864 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CLK1P49759 TSKU-203ENST00000527881 3554 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 UBE2L3-204ENST00000545681 2932 ntTSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 PDE1B-203ENST00000538346 1711 ntTSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 CALM1-201ENST00000356978 4242 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 SYTL2-206ENST00000389960 4299 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 C2orf69-201ENST00000319974 3728 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 AC091181.1-201ENST00000623762 2098 ntBASIC12.51□□□□□ -0.41
CLK1P49759 INTS6L-201ENST00000370752 3793 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 DKKL1P1-201ENST00000400550 698 ntBASIC12.51□□□□□ -0.41
CLK1P49759 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 AC092573.1-201ENST00000433054 884 ntBASIC12.51□□□□□ -0.41
CLK1P49759 MAGEA5-201ENST00000446757 942 ntBASIC12.51□□□□□ -0.41
CLK1P49759 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 IGLV3-15-201ENST00000518356 244 ntBASIC12.51□□□□□ -0.41
CLK1P49759 AC134698.3-201ENST00000523880 214 ntBASIC12.51□□□□□ -0.41
CLK1P49759 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.51□□□□□ -0.41
CLK1P49759 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC12.51□□□□□ -0.41
CLK1P49759 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC12.51□□□□□ -0.41
CLK1P49759 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC12.51□□□□□ -0.41
CLK1P49759 DNAJB5-210ENST00000545841 3068 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 SUN2-202ENST00000405510 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 CUL9-201ENST00000252050 7780 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 CIT-203ENST00000392521 8708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 UGT1A3-201ENST00000482026 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 TSPAN9-201ENST00000011898 4323 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 TP53I11-203ENST00000395648 3381 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 PLEKHG4-204ENST00000427155 4455 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 EPB41L5-201ENST00000263713 6628 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 GUCY1A3-205ENST00000506455 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 RBM8A-204ENST00000583313 4961 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 EDARADD-204ENST00000637660 2803 ntTSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 FHOD1-201ENST00000258201 3990 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 BIVM-ERCC5-204ENST00000639132 5195 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CLK1P49759 ZIK1-202ENST00000536878 4144 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
CLK1P49759 MSH6-213ENST00000614496 4150 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 WDR27-203ENST00000448612 3178 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLK1P49759 PCSK7-215ENST00000540028 3332 ntTSL 2 BASIC12.5□□□□□ -0.41
CLK1P49759 ETNK1-201ENST00000266517 7159 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 LITAF-221ENST00000622633 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 KLLN-201ENST00000445946 4277 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CLK1P49759 CHGB-201ENST00000378961 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLK1P49759 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms