Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 CDKN2B-201ENST00000276925 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 DAG1-218ENST00000515359 5576 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CLK1P49759 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.55□□□□□ -0.4
CLK1P49759 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 AL627231.1-201ENST00000394467 1125 ntBASIC12.55□□□□□ -0.4
CLK1P49759 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 RPL8P2-201ENST00000430538 502 ntBASIC12.55□□□□□ -0.4
CLK1P49759 AL512306.1-201ENST00000432698 848 ntBASIC12.55□□□□□ -0.4
CLK1P49759 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC12.55□□□□□ -0.4
CLK1P49759 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 IGHJ2P-201ENST00000454480 60 ntBASIC12.55□□□□□ -0.4
CLK1P49759 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 SCARNA12-201ENST00000459155 270 ntBASIC12.55□□□□□ -0.4
CLK1P49759 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 AC138701.2-201ENST00000553634 226 ntBASIC12.55□□□□□ -0.4
CLK1P49759 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.55□□□□□ -0.4
CLK1P49759 AP005264.5-201ENST00000590066 467 ntBASIC12.55□□□□□ -0.4
CLK1P49759 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC12.55□□□□□ -0.4
CLK1P49759 HPX-213ENST00000615166 826 ntTSL 5 BASIC12.55□□□□□ -0.4
CLK1P49759 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.55□□□□□ -0.4
CLK1P49759 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 CA10-202ENST00000442502 2935 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 AC006372.4-201ENST00000624122 1543 ntBASIC12.55□□□□□ -0.4
CLK1P49759 AC008040.5-201ENST00000599781 1781 ntBASIC12.55□□□□□ -0.4
CLK1P49759 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 ZBTB26-201ENST00000373654 2047 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC12.55□□□□□ -0.4
CLK1P49759 KCNA4-201ENST00000328224 4172 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 ABLIM3-203ENST00000356541 2290 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 ABLIM3-211ENST00000517451 2287 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 PLEKHG5-202ENST00000377725 3475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 HTR2C-203ENST00000371951 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 TRO-202ENST00000319167 2326 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 TRO-203ENST00000375022 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 MOB3C-201ENST00000271139 2800 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 AC096564.1-201ENST00000499098 2810 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
CLK1P49759 PNPLA7-201ENST00000277531 4581 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 AL162391.1-201ENST00000419853 2102 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 CAP2P1-201ENST00000557743 1390 ntBASIC12.55□□□□□ -0.4
CLK1P49759 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC12.55□□□□□ -0.4
CLK1P49759 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC12.55□□□□□ -0.4
CLK1P49759 SLC25A13-202ENST00000416240 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLK1P49759 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CLK1P49759 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC12.54□□□□□ -0.4
CLK1P49759 SHROOM3-201ENST00000296043 11020 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 GRM4-204ENST00000535756 6670 ntTSL 5 BASIC12.54□□□□□ -0.4
CLK1P49759 HLA-DQB1-202ENST00000399079 1501 ntBASIC12.54□□□□□ -0.4
CLK1P49759 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC12.54□□□□□ -0.4
CLK1P49759 SLITRK3-201ENST00000241274 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.54□□□□□ -0.4
CLK1P49759 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.54□□□□□ -0.4
CLK1P49759 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.54□□□□□ -0.4
CLK1P49759 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.54□□□□□ -0.4
CLK1P49759 BCYRN1-201ENST00000418539 200 ntBASIC12.54□□□□□ -0.4
CLK1P49759 AC005722.1-201ENST00000431878 964 ntBASIC12.54□□□□□ -0.4
CLK1P49759 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC12.54□□□□□ -0.4
CLK1P49759 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC12.54□□□□□ -0.4
CLK1P49759 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CLK1P49759 GRPEL2P1-201ENST00000453145 339 ntBASIC12.54□□□□□ -0.4
CLK1P49759 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLK1P49759 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.54□□□□□ -0.4
CLK1P49759 AC130709.1-201ENST00000484779 1212 ntBASIC12.54□□□□□ -0.4
CLK1P49759 RN7SL81P-201ENST00000493781 261 ntBASIC12.54□□□□□ -0.4
CLK1P49759 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.54□□□□□ -0.4
CLK1P49759 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC12.54□□□□□ -0.4
CLK1P49759 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.54□□□□□ -0.4
CLK1P49759 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.54□□□□□ -0.4
CLK1P49759 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms