Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 FMO6P-201ENST00000236166 1620 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 AL591499.1-201ENST00000307155 1153 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 MKL1-204ENST00000402630 747 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 MPV17-209ENST00000405983 859 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 OR52X1P-201ENST00000446117 914 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RN7SL33P-201ENST00000462543 342 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 AC104212.2-201ENST00000478813 628 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 CCND3P2-201ENST00000579393 537 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 MIR6819-201ENST00000622122 61 ntBASIC12.8□□□□□ -0.36
COL28A1Q2UY09 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 NME1-209ENST00000511355 1645 ntTSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.8□□□□□ -0.36
COL28A1Q2UY09 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SPTLC1P3-201ENST00000403408 259 ntBASIC12.79□□□□□ -0.36
COL28A1Q2UY09 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC12.79□□□□□ -0.36
COL28A1Q2UY09 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms