Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS33AQ96AX1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS33AQ96AX1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS33AQ96AX1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
VPS33AQ96AX1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 SNX5-217ENST00000606557 1087 ntBASIC21.15■□□□□ 0.98
VPS33AQ96AX1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS33AQ96AX1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS33AQ96AX1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.14■□□□□ 0.98
VPS33AQ96AX1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VPS33AQ96AX1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.14■□□□□ 0.98
VPS33AQ96AX1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS33AQ96AX1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS33AQ96AX1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.14■□□□□ 0.97
VPS33AQ96AX1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.14■□□□□ 0.97
VPS33AQ96AX1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 FBXW4P1-201ENST00000426721 2239 ntBASIC21.13■□□□□ 0.97
VPS33AQ96AX1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
VPS33AQ96AX1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 MIR4508-201ENST00000584178 70 ntBASIC21.12■□□□□ 0.97
VPS33AQ96AX1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS33AQ96AX1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS33AQ96AX1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS33AQ96AX1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 AC103834.1-201ENST00000520383 144 ntBASIC21.09■□□□□ 0.97
VPS33AQ96AX1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS33AQ96AX1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS33AQ96AX1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS33AQ96AX1 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS33AQ96AX1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS33AQ96AX1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS33AQ96AX1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VPS33AQ96AX1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.08■□□□□ 0.96
VPS33AQ96AX1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
VPS33AQ96AX1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS33AQ96AX1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS33AQ96AX1 AL024507.2-201ENST00000606070 2574 ntBASIC21.07■□□□□ 0.96
VPS33AQ96AX1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms