Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC15.28■□□□□ 0.04
CKS1BP61024 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
CKS1BP61024 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS1BP61024 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CKS1BP61024 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC15.27■□□□□ 0.04
CKS1BP61024 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS1BP61024 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.27■□□□□ 0.04
CKS1BP61024 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS1BP61024 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS1BP61024 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC15.27■□□□□ 0.04
CKS1BP61024 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS1BP61024 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS1BP61024 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CKS1BP61024 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CKS1BP61024 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC15.27■□□□□ 0.04
CKS1BP61024 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC15.27■□□□□ 0.04
CKS1BP61024 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC15.27■□□□□ 0.03
CKS1BP61024 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CKS1BP61024 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC15.27■□□□□ 0.03
CKS1BP61024 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CKS1BP61024 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC15.27■□□□□ 0.03
CKS1BP61024 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CKS1BP61024 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CKS1BP61024 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CKS1BP61024 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CKS1BP61024 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.26■□□□□ 0.03
CKS1BP61024 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC15.26■□□□□ 0.03
CKS1BP61024 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CKS1BP61024 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC15.26■□□□□ 0.03
CKS1BP61024 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CKS1BP61024 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CKS1BP61024 AL161729.1-201ENST00000604104 1402 ntBASIC15.26■□□□□ 0.03
CKS1BP61024 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CKS1BP61024 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CKS1BP61024 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC15.25■□□□□ 0.03
CKS1BP61024 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC15.25■□□□□ 0.03
CKS1BP61024 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.25■□□□□ 0.03
CKS1BP61024 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CKS1BP61024 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
CKS1BP61024 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.25■□□□□ 0.03
CKS1BP61024 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
CKS1BP61024 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC15.25■□□□□ 0.03
CKS1BP61024 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CKS1BP61024 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CKS1BP61024 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC15.25■□□□□ 0.03
CKS1BP61024 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CKS1BP61024 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.24■□□□□ 0.03
CKS1BP61024 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CKS1BP61024 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CKS1BP61024 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC15.24■□□□□ 0.03
CKS1BP61024 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC15.24■□□□□ 0.03
CKS1BP61024 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC15.24■□□□□ 0.03
CKS1BP61024 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC15.24■□□□□ 0.03
CKS1BP61024 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CKS1BP61024 AC026471.1-201ENST00000564629 3026 ntBASIC15.24■□□□□ 0.03
CKS1BP61024 AC090877.2-201ENST00000558441 1738 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms