Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX3P48380 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
RFX3P48380 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.61■□□□□ 0.89
RFX3P48380 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX3P48380 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.61■□□□□ 0.89
RFX3P48380 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.61■□□□□ 0.89
RFX3P48380 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.61■□□□□ 0.89
RFX3P48380 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.61■□□□□ 0.89
RFX3P48380 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RFX3P48380 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.61■□□□□ 0.89
RFX3P48380 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RFX3P48380 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
RFX3P48380 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RFX3P48380 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
RFX3P48380 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
RFX3P48380 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RFX3P48380 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.6■□□□□ 0.89
RFX3P48380 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.6■□□□□ 0.89
RFX3P48380 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.6■□□□□ 0.89
RFX3P48380 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.6■□□□□ 0.89
RFX3P48380 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RFX3P48380 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.59■□□□□ 0.89
RFX3P48380 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.59■□□□□ 0.89
RFX3P48380 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RFX3P48380 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RFX3P48380 C1orf229-201ENST00000623686 2258 ntBASIC20.59■□□□□ 0.89
RFX3P48380 SRD5A1P1-201ENST00000442297 786 ntBASIC20.59■□□□□ 0.89
RFX3P48380 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RFX3P48380 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX3P48380 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX3P48380 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX3P48380 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
RFX3P48380 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RFX3P48380 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RFX3P48380 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.59■□□□□ 0.89
RFX3P48380 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.58■□□□□ 0.89
RFX3P48380 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX3P48380 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX3P48380 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
RFX3P48380 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RFX3P48380 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RFX3P48380 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.58■□□□□ 0.89
RFX3P48380 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.58■□□□□ 0.89
RFX3P48380 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.58■□□□□ 0.89
RFX3P48380 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.58■□□□□ 0.89
RFX3P48380 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RFX3P48380 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.58■□□□□ 0.89
RFX3P48380 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.58■□□□□ 0.88
RFX3P48380 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
RFX3P48380 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.58■□□□□ 0.88
RFX3P48380 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RFX3P48380 FP325331.1-202ENST00000623531 1380 ntBASIC20.58■□□□□ 0.88
RFX3P48380 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
RFX3P48380 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.58■□□□□ 0.88
RFX3P48380 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RFX3P48380 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RFX3P48380 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.57■□□□□ 0.88
RFX3P48380 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.57■□□□□ 0.88
RFX3P48380 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.57■□□□□ 0.88
RFX3P48380 AC099791.2-201ENST00000605725 427 ntBASIC20.57■□□□□ 0.88
RFX3P48380 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.57■□□□□ 0.88
RFX3P48380 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RFX3P48380 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.57■□□□□ 0.88
RFX3P48380 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.57■□□□□ 0.88
RFX3P48380 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.57■□□□□ 0.88
RFX3P48380 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.56■□□□□ 0.88
RFX3P48380 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.56■□□□□ 0.88
RFX3P48380 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
RFX3P48380 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.56■□□□□ 0.88
RFX3P48380 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RFX3P48380 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX3P48380 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
RFX3P48380 AC131281.2-201ENST00000520478 145 ntBASIC20.56■□□□□ 0.88
RFX3P48380 AC009086.3-201ENST00000623486 1008 ntBASIC20.56■□□□□ 0.88
RFX3P48380 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.56■□□□□ 0.88
RFX3P48380 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX3P48380 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX3P48380 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.56■□□□□ 0.88
RFX3P48380 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX3P48380 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RFX3P48380 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RFX3P48380 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RFX3P48380 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms