Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC30.69■■■□□ 2.5
BRD4O60885 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRD4O60885 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
BRD4O60885 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRD4O60885 AC092437.1-201ENST00000624794 1048 ntBASIC30.68■■■□□ 2.5
BRD4O60885 ANOS2P-203ENST00000472227 1816 ntBASIC30.68■■■□□ 2.5
BRD4O60885 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
BRD4O60885 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
BRD4O60885 AC092068.2-201ENST00000590491 1708 ntBASIC30.68■■■□□ 2.5
BRD4O60885 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC30.68■■■□□ 2.5
BRD4O60885 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC30.67■■■□□ 2.5
BRD4O60885 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
BRD4O60885 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC30.67■■■□□ 2.5
BRD4O60885 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
BRD4O60885 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
BRD4O60885 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC30.67■■■□□ 2.5
BRD4O60885 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
BRD4O60885 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
BRD4O60885 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
BRD4O60885 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC30.66■■■□□ 2.5
BRD4O60885 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC30.66■■■□□ 2.5
BRD4O60885 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 AC090192.1-201ENST00000517740 490 ntBASIC30.66■■■□□ 2.5
BRD4O60885 IKBKGP1-201ENST00000612193 1073 ntBASIC30.66■■■□□ 2.5
BRD4O60885 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
BRD4O60885 NFE2L3P1-201ENST00000588207 1959 ntBASIC30.66■■■□□ 2.5
BRD4O60885 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
BRD4O60885 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRD4O60885 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
BRD4O60885 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC30.65■■■□□ 2.5
BRD4O60885 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRD4O60885 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
BRD4O60885 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRD4O60885 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC30.65■■■□□ 2.5
BRD4O60885 H19-210ENST00000439725 1929 ntTSL 2 BASIC30.65■■■□□ 2.5
BRD4O60885 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRD4O60885 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC30.65■■■□□ 2.5
BRD4O60885 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC30.65■■■□□ 2.5
BRD4O60885 TERF1P2-201ENST00000583350 1212 ntBASIC30.65■■■□□ 2.5
BRD4O60885 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
BRD4O60885 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.65■■■□□ 2.5
BRD4O60885 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
BRD4O60885 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
BRD4O60885 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
BRD4O60885 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
BRD4O60885 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC30.64■■■□□ 2.5
BRD4O60885 AP005435.1-201ENST00000529293 1178 ntBASIC30.64■■■□□ 2.5
BRD4O60885 AL137784.2-201ENST00000607332 1000 ntBASIC30.64■■■□□ 2.5
BRD4O60885 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC30.64■■■□□ 2.5
BRD4O60885 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
BRD4O60885 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
BRD4O60885 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
BRD4O60885 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC30.63■■■□□ 2.49
BRD4O60885 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC30.63■■■□□ 2.49
BRD4O60885 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC30.63■■■□□ 2.49
BRD4O60885 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC30.63■■■□□ 2.49
BRD4O60885 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
BRD4O60885 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
BRD4O60885 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
BRD4O60885 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
BRD4O60885 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC30.63■■■□□ 2.49
BRD4O60885 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
BRD4O60885 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
BRD4O60885 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
BRD4O60885 CCDC92B-201ENST00000575506 885 ntBASIC30.63■■■□□ 2.49
BRD4O60885 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
BRD4O60885 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
BRD4O60885 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.62■■■□□ 2.49
BRD4O60885 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
BRD4O60885 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
BRD4O60885 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC30.62■■■□□ 2.49
BRD4O60885 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC30.62■■■□□ 2.49
BRD4O60885 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC30.62■■■□□ 2.49
BRD4O60885 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
BRD4O60885 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
BRD4O60885 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
BRD4O60885 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC30.62■■■□□ 2.49
BRD4O60885 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
BRD4O60885 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
BRD4O60885 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
BRD4O60885 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC30.61■■■□□ 2.49
BRD4O60885 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
BRD4O60885 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC30.61■■■□□ 2.49
BRD4O60885 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
BRD4O60885 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
BRD4O60885 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
BRD4O60885 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
BRD4O60885 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.61■■■□□ 2.49
BRD4O60885 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.61■■■□□ 2.49
BRD4O60885 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC30.6■■■□□ 2.49
BRD4O60885 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
BRD4O60885 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC30.6■■■□□ 2.49
BRD4O60885 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC30.6■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms