Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008620.2-201ENST00000510294 1569 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AL121949.1-201ENST00000402043 968 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 PHBP10-201ENST00000416467 784 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 HNRNPA3P12-201ENST00000437410 1063 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ALDOAP1-201ENST00000491506 1078 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 METTL7AP1-201ENST00000547343 496 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AC022966.2-201ENST00000587434 367 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 SNX20-205ENST00000610485 557 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 SALL4P6-201ENST00000429385 1691 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AC092115.1-201ENST00000566277 1402 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 PCDHB18P-202ENST00000526308 3197 ntBASIC12.85□□□□□ -0.35
COL28A1Q2UY09 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC12.85□□□□□ -0.35
COL28A1Q2UY09 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 RNA5SP491-201ENST00000362936 118 ntBASIC12.84□□□□□ -0.35
COL28A1Q2UY09 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AC139143.1-201ENST00000441772 1207 ntBASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 JPT1-205ENST00000470924 663 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AL139317.2-201ENST00000556998 158 ntBASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms