Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 AC020931.1-201ENST00000589622 1346 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 POM121L4P-202ENST00000427789 1891 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 ADAM19-201ENST00000257527 6481 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CAP2P1-201ENST00000557743 1390 ntBASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 ZNF701-204ENST00000540331 5538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC11.27□□□□□ -0.61
PDLIM3Q53GG5 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 SPIN3-201ENST00000374919 4642 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 NTRK2-208ENST00000395882 7111 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 GRIP2-205ENST00000621039 7752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 OR2K2-202ENST00000374428 1038 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 KRT17P4-201ENST00000429445 819 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC008723.1-201ENST00000506922 207 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC100827.2-201ENST00000563214 1194 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC005324.6-201ENST00000587972 613 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AL132994.2-201ENST00000603120 687 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC004686.1-201ENST00000605113 538 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC138466.5-201ENST00000624002 808 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AL139424.3-202ENST00000641619 917 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AC102953.2-201ENST00000609755 3026 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 AMT-221ENST00000538581 2038 ntTSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 CEP170-204ENST00000366544 6805 ntTSL 5 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 CES1P1-201ENST00000421606 1704 ntBASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 KIF13A-201ENST00000259711 5941 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
PDLIM3Q53GG5 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 HYPK-201ENST00000406925 4777 ntAPPRIS P2 TSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 SLC26A4-201ENST00000265715 4930 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 CXorf38-203ENST00000378426 4895 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 GRM4-204ENST00000535756 6670 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ZNF436-AS1-201ENST00000335648 2547 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 SOD2-202ENST00000367054 815 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms