Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 LINC01006-201ENST00000333319 2292 ntBASIC20.9■□□□□ 0.94
LRRC42Q9Y546 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LRRC42Q9Y546 AC087742.1-201ENST00000575880 1738 ntBASIC20.9■□□□□ 0.94
LRRC42Q9Y546 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.89■□□□□ 0.94
LRRC42Q9Y546 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.89■□□□□ 0.94
LRRC42Q9Y546 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LRRC42Q9Y546 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC42Q9Y546 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 AL162393.1-201ENST00000437852 946 ntBASIC20.88■□□□□ 0.93
LRRC42Q9Y546 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
LRRC42Q9Y546 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 AC008813.1-201ENST00000536597 885 ntBASIC20.87■□□□□ 0.93
LRRC42Q9Y546 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.87■□□□□ 0.93
LRRC42Q9Y546 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC42Q9Y546 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRRC42Q9Y546 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC42Q9Y546 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC42Q9Y546 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRC42Q9Y546 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC42Q9Y546 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRC42Q9Y546 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRC42Q9Y546 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms