Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 AC009102.2-201ENST00000606772 1639 ntBASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HIF3AQ9Y2N7 LINC00526-201ENST00000581067 1875 ntBASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 AC242852.2-201ENST00000615738 1807 ntBASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HIF3AQ9Y2N7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HIF3AQ9Y2N7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 TSPY9P-201ENST00000440215 945 ntBASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 TSPY11P-201ENST00000442607 1045 ntBASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HIF3AQ9Y2N7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 AC009086.3-201ENST00000623486 1008 ntBASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HIF3AQ9Y2N7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 C17orf82-201ENST00000623772 1530 ntBASIC19.92■□□□□ 0.78
HIF3AQ9Y2N7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 AC087742.1-201ENST00000575880 1738 ntBASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HIF3AQ9Y2N7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.9■□□□□ 0.78
HIF3AQ9Y2N7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HIF3AQ9Y2N7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 UNC93B8-201ENST00000511903 705 ntBASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms