Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VSX1Q9NZR4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VSX1Q9NZR4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VSX1Q9NZR4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VSX1Q9NZR4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VSX1Q9NZR4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 TSPY9P-201ENST00000440215 945 ntBASIC19.73■□□□□ 0.75
VSX1Q9NZR4 TSPY11P-201ENST00000442607 1045 ntBASIC19.73■□□□□ 0.75
VSX1Q9NZR4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 AC242852.2-201ENST00000615738 1807 ntBASIC19.73■□□□□ 0.75
VSX1Q9NZR4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 EP400NL-214ENST00000641289 2402 ntBASIC19.73■□□□□ 0.75
VSX1Q9NZR4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
VSX1Q9NZR4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 AC009086.3-201ENST00000623486 1008 ntBASIC19.72■□□□□ 0.75
VSX1Q9NZR4 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.72■□□□□ 0.75
VSX1Q9NZR4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.71■□□□□ 0.75
VSX1Q9NZR4 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 C17orf82-201ENST00000623772 1530 ntBASIC19.7■□□□□ 0.74
VSX1Q9NZR4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX1Q9NZR4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 AC087742.1-201ENST00000575880 1738 ntBASIC19.69■□□□□ 0.74
VSX1Q9NZR4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX1Q9NZR4 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 UNC93B8-201ENST00000511903 705 ntBASIC19.68■□□□□ 0.74
VSX1Q9NZR4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VSX1Q9NZR4 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VSX1Q9NZR4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VSX1Q9NZR4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
VSX1Q9NZR4 MIR6724-1-201ENST00000616420 92 ntBASIC19.67■□□□□ 0.74
VSX1Q9NZR4 MIR6724-2-201ENST00000616483 92 ntBASIC19.67■□□□□ 0.74
VSX1Q9NZR4 MIR6724-4-201ENST00000617390 92 ntBASIC19.67■□□□□ 0.74
VSX1Q9NZR4 MIR6724-3-201ENST00000622482 92 ntBASIC19.67■□□□□ 0.74
VSX1Q9NZR4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VSX1Q9NZR4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VSX1Q9NZR4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.66■□□□□ 0.74
VSX1Q9NZR4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VSX1Q9NZR4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms