Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
SCN3AQ9NY46 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 AL031432.3-201ENST00000607698 485 ntBASIC21.04■□□□□ 0.96
SCN3AQ9NY46 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 AC133637.1-201ENST00000624115 1537 ntBASIC21.04■□□□□ 0.96
SCN3AQ9NY46 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SCN3AQ9NY46 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 DUX4L4-201ENST00000566884 1269 ntBASIC21.03■□□□□ 0.96
SCN3AQ9NY46 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.03■□□□□ 0.96
SCN3AQ9NY46 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SCN3AQ9NY46 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SCN3AQ9NY46 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SCN3AQ9NY46 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SCN3AQ9NY46 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.02■□□□□ 0.96
SCN3AQ9NY46 AL138724.1-201ENST00000606771 1088 ntBASIC21.02■□□□□ 0.96
SCN3AQ9NY46 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.02■□□□□ 0.96
SCN3AQ9NY46 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SCN3AQ9NY46 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.02■□□□□ 0.95
SCN3AQ9NY46 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 AL499627.2-201ENST00000606283 725 ntBASIC21.01■□□□□ 0.95
SCN3AQ9NY46 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.01■□□□□ 0.95
SCN3AQ9NY46 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SCN3AQ9NY46 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21■□□□□ 0.95
SCN3AQ9NY46 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 AF213884.3-201ENST00000563833 479 ntBASIC21■□□□□ 0.95
SCN3AQ9NY46 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SCN3AQ9NY46 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21■□□□□ 0.95
SCN3AQ9NY46 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21■□□□□ 0.95
SCN3AQ9NY46 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21■□□□□ 0.95
SCN3AQ9NY46 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21■□□□□ 0.95
SCN3AQ9NY46 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21■□□□□ 0.95
SCN3AQ9NY46 MAG-206ENST00000597035 542 ntTSL 4 BASIC21■□□□□ 0.95
SCN3AQ9NY46 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21■□□□□ 0.95
SCN3AQ9NY46 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SCN3AQ9NY46 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SCN3AQ9NY46 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.99■□□□□ 0.95
SCN3AQ9NY46 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.99■□□□□ 0.95
SCN3AQ9NY46 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SCN3AQ9NY46 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SCN3AQ9NY46 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SCN3AQ9NY46 AP001330.3-201ENST00000520123 633 ntBASIC20.99■□□□□ 0.95
SCN3AQ9NY46 MIR4767-201ENST00000582827 78 ntBASIC20.99■□□□□ 0.95
SCN3AQ9NY46 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SCN3AQ9NY46 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 EDA-201ENST00000338901 1233 ntBASIC20.97■□□□□ 0.95
SCN3AQ9NY46 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 AC092171.4-201ENST00000609130 632 ntBASIC20.97■□□□□ 0.95
SCN3AQ9NY46 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SCN3AQ9NY46 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms