Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TM9SF3Q9HD45 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TM9SF3Q9HD45 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TM9SF3Q9HD45 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 AC010525.1-201ENST00000585559 441 ntBASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 AL354811.1-201ENST00000610286 706 ntBASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 RARRES2P11-201ENST00000635158 484 ntBASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TM9SF3Q9HD45 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
TM9SF3Q9HD45 FP325331.1-202ENST00000623531 1380 ntBASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 OR2I1P-207ENST00000453522 948 ntBASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 AC090192.1-201ENST00000517740 490 ntBASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 DUX4L4-201ENST00000566884 1269 ntBASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TM9SF3Q9HD45 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 AL137784.2-201ENST00000607332 1000 ntBASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TM9SF3Q9HD45 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 LINC00543-201ENST00000567234 1845 ntBASIC22.1■■□□□ 1.13
TM9SF3Q9HD45 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 CCDC92B-201ENST00000575506 885 ntBASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 AC092437.1-201ENST00000624794 1048 ntBASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TM9SF3Q9HD45 AC012676.1-201ENST00000574705 1949 ntBASIC22.08■■□□□ 1.13
TM9SF3Q9HD45 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.08■■□□□ 1.13
TM9SF3Q9HD45 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TM9SF3Q9HD45 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TM9SF3Q9HD45 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TM9SF3Q9HD45 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms