Protein–RNA interactions for Protein: Q9BZ76

CNTNAP3, Contactin-associated protein-like 3, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3Q9BZ76 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNTNAP3Q9BZ76 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CNTNAP3Q9BZ76 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.23■□□□□ 0.99
CNTNAP3Q9BZ76 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNTNAP3Q9BZ76 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CNTNAP3Q9BZ76 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.21■□□□□ 0.99
CNTNAP3Q9BZ76 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CNTNAP3Q9BZ76 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CNTNAP3Q9BZ76 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 RARRES2P4-201ENST00000514074 484 ntBASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3Q9BZ76 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 AF201337.1-201ENST00000520239 748 ntBASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3Q9BZ76 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 AC008550.1-201ENST00000511500 884 ntBASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 AC010525.1-201ENST00000585559 441 ntBASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3Q9BZ76 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTNAP3Q9BZ76 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.15■□□□□ 0.98
CNTNAP3Q9BZ76 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms