Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.36■■□□□ 1.81
CTR9Q6PD62 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CTR9Q6PD62 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTR9Q6PD62 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC26.35■■□□□ 1.81
CTR9Q6PD62 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.35■■□□□ 1.81
CTR9Q6PD62 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC26.35■■□□□ 1.81
CTR9Q6PD62 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC26.35■■□□□ 1.81
CTR9Q6PD62 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.35■■□□□ 1.81
CTR9Q6PD62 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTR9Q6PD62 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.34■■□□□ 1.81
CTR9Q6PD62 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
CTR9Q6PD62 AC126544.1-201ENST00000580842 1059 ntBASIC26.34■■□□□ 1.81
CTR9Q6PD62 AC004687.1-201ENST00000579003 1625 ntBASIC26.34■■□□□ 1.81
CTR9Q6PD62 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.34■■□□□ 1.81
CTR9Q6PD62 STX4-202ENST00000394998 1498 ntTSL 2 BASIC26.34■■□□□ 1.81
CTR9Q6PD62 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CTR9Q6PD62 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTR9Q6PD62 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTR9Q6PD62 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
CTR9Q6PD62 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CTR9Q6PD62 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CTR9Q6PD62 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
CTR9Q6PD62 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.33■■□□□ 1.81
CTR9Q6PD62 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC26.33■■□□□ 1.8
CTR9Q6PD62 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTR9Q6PD62 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.32■■□□□ 1.8
CTR9Q6PD62 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTR9Q6PD62 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTR9Q6PD62 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.32■■□□□ 1.8
CTR9Q6PD62 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CTR9Q6PD62 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CTR9Q6PD62 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC26.32■■□□□ 1.8
CTR9Q6PD62 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTR9Q6PD62 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTR9Q6PD62 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTR9Q6PD62 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTR9Q6PD62 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTR9Q6PD62 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTR9Q6PD62 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.31■■□□□ 1.8
CTR9Q6PD62 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTR9Q6PD62 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTR9Q6PD62 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTR9Q6PD62 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
CTR9Q6PD62 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTR9Q6PD62 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC26.3■■□□□ 1.8
CTR9Q6PD62 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.3■■□□□ 1.8
CTR9Q6PD62 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTR9Q6PD62 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTR9Q6PD62 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTR9Q6PD62 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC26.29■■□□□ 1.8
CTR9Q6PD62 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.29■■□□□ 1.8
CTR9Q6PD62 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTR9Q6PD62 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTR9Q6PD62 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CTR9Q6PD62 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTR9Q6PD62 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.28■■□□□ 1.8
CTR9Q6PD62 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTR9Q6PD62 IRS3P-201ENST00000223076 1006 ntBASIC26.27■■□□□ 1.8
CTR9Q6PD62 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTR9Q6PD62 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 TSPY26P-201ENST00000476365 1326 ntBASIC26.27■■□□□ 1.8
CTR9Q6PD62 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTR9Q6PD62 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CTR9Q6PD62 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC26.27■■□□□ 1.8
CTR9Q6PD62 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTR9Q6PD62 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.26■■□□□ 1.79
CTR9Q6PD62 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms