Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 Z98257.2-202ENST00000641138 1548 ntBASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 RPL10-203ENST00000406022 748 ntTSL 3 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 SERBP1P2-201ENST00000436888 1164 ntBASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 NALT1-202ENST00000450304 437 ntTSL 3 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 AC112250.1-201ENST00000504640 745 ntBASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 MIR5091-201ENST00000578707 93 ntBASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 FGFR2-212ENST00000369060 3244 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 SHOC2-202ENST00000369452 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 NEK11-202ENST00000383366 2914 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 DLX4-206ENST00000611342 1662 ntBASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 DDC-206ENST00000431062 1620 ntTSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.66□□□□□ -0.22
SHROOM3Q8TF72 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 BAK1P1-201ENST00000317045 636 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 CISD2-202ENST00000503643 808 ntTSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 MYOZ3-205ENST00000520112 605 ntTSL 4 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 PABPC1P2-201ENST00000471997 1805 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 STPG4-201ENST00000294947 1621 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AL359183.1-201ENST00000623796 2132 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 VRK3-205ENST00000593919 1979 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AL109809.1-201ENST00000418979 1367 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 MPV17-209ENST00000405983 859 ntTSL 5 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AL135901.1-201ENST00000451812 333 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 PFN2-212ENST00000490975 858 ntTSL 4 BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 AP005264.6-204ENST00000588436 719 ntBASIC13.65□□□□□ -0.22
SHROOM3Q8TF72 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms