Protein–RNA interactions for Protein: Q5VT25

CDC42BPA, Serine/threonine-protein kinase MRCK alpha, humanhuman

Predictions only

Length 1,732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPAQ5VT25 TBC1D21-201ENST00000300504 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 LMO7DN-201ENST00000318245 1167 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 DTX3L-202ENST00000383661 687 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 IGKV6-21-201ENST00000390256 406 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 AL669970.2-201ENST00000446184 280 ntTSL 3 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 VDAC1P13-201ENST00000447826 859 ntBASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 MTND6P9-201ENST00000458075 519 ntBASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 RN7SL225P-201ENST00000464648 298 ntBASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 GAPDHP76-201ENST00000512278 976 ntBASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 AC007923.4-201ENST00000578650 568 ntTSL 4 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 FAM95B1-214ENST00000593216 759 ntTSL 5 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 LINC01206-212ENST00000609168 988 ntTSL 5 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 UBR1-212ENST00000627960 189 ntTSL 5 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 AC126564.1-201ENST00000623628 2013 ntBASIC19.52■□□□□ 0.72
CDC42BPAQ5VT25 AC007622.2-202ENST00000546714 1680 ntTSL 2 BASIC19.52■□□□□ 0.71
CDC42BPAQ5VT25 CABYR-203ENST00000399496 1414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CDC42BPAQ5VT25 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CDC42BPAQ5VT25 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AREG-201ENST00000395748 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 RBMXP2-201ENST00000434705 1168 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC008040.3-201ENST00000493762 1232 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC010267.1-201ENST00000508636 553 ntTSL 4 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 KXD1-210ENST00000599000 498 ntTSL 2 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC112236.2-201ENST00000608402 845 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC008806.1-201ENST00000624962 2443 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 FAM230B-205ENST00000424410 1856 ntTSL 5 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 ELP4-225ENST00000640533 1801 ntTSL 5 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AL354704.1-201ENST00000629369 1966 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 CCRL2-202ENST00000399036 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 ALG8-201ENST00000299626 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 MRPL27-201ENST00000225969 716 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 PSORS1C2-201ENST00000259845 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 TMEM107-201ENST00000316425 756 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 MGST3-204ENST00000367888 778 ntTSL 3 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 HLA-DQB1-203ENST00000399082 1219 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 HLA-DQB3-203ENST00000425319 356 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 TUSC8-201ENST00000432701 978 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 SCLT1-202ENST00000439369 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 TEPP-202ENST00000441824 998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC016304.1-201ENST00000476363 413 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC022239.3-201ENST00000528629 544 ntTSL 4 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 LINC02395-202ENST00000547443 724 ntTSL 3 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 MIR4688-201ENST00000577966 83 ntBASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDC42BPAQ5VT25 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 WDSUB1-204ENST00000409124 1600 ntTSL 5 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 AP003063.2-201ENST00000525984 2067 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 MSRA-202ENST00000382490 1460 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 PRSS3-203ENST00000379405 834 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 LINC00189-201ENST00000420364 989 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 COQ5-202ENST00000445328 992 ntTSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 OR5BA1P-201ENST00000529722 982 ntBASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 AC021755.2-201ENST00000559022 461 ntTSL 5 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 RPL37A-212ENST00000600880 425 ntTSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 PABPC1L-207ENST00000372824 2223 ntTSL 2 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDC42BPAQ5VT25 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDC42BPAQ5VT25 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDC42BPAQ5VT25 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDC42BPAQ5VT25 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDC42BPAQ5VT25 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms