Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
LYSMD3Q7Z3D4 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 TUBB2BP1-201ENST00000404155 871 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 AC136604.1-202ENST00000425471 771 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 LYPLA2P1-203ENST00000447689 696 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 RN7SL23P-201ENST00000484055 275 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PIGCP1-201ENST00000527583 895 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 MBP-238ENST00000580402 915 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 AC125807.2-201ENST00000513358 3514 ntBASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
LYSMD3Q7Z3D4 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
LYSMD3Q7Z3D4 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.23
LYSMD3Q7Z3D4 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
LYSMD3Q7Z3D4 AC092115.1-201ENST00000566277 1402 ntBASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 SNU13-204ENST00000402458 462 ntTSL 3 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC13.64□□□□□ -0.23
LYSMD3Q7Z3D4 CFL1-206ENST00000527344 962 ntTSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms