Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KRT19P1-201ENST00000405746 1186 ntBASIC22.31■■□□□ 1.16
VPS13AQ96RL7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
VPS13AQ96RL7 AC083906.2-201ENST00000511578 360 ntBASIC22.31■■□□□ 1.16
VPS13AQ96RL7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
VPS13AQ96RL7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.31■■□□□ 1.16
VPS13AQ96RL7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.31■■□□□ 1.16
VPS13AQ96RL7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
VPS13AQ96RL7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.31■■□□□ 1.16
VPS13AQ96RL7 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS13AQ96RL7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS13AQ96RL7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.28■■□□□ 1.16
VPS13AQ96RL7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS13AQ96RL7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.27■■□□□ 1.15
VPS13AQ96RL7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.26■■□□□ 1.15
VPS13AQ96RL7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS13AQ96RL7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 AL596275.1-201ENST00000423464 877 ntBASIC22.24■■□□□ 1.15
VPS13AQ96RL7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS13AQ96RL7 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.23■■□□□ 1.15
VPS13AQ96RL7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 GCSHP5-201ENST00000443090 522 ntBASIC22.22■■□□□ 1.15
VPS13AQ96RL7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 KRT18P11-201ENST00000435214 1283 ntBASIC22.22■■□□□ 1.15
VPS13AQ96RL7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS13AQ96RL7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms