Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF4P78317 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RNF4P78317 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF4P78317 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF4P78317 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF4P78317 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF4P78317 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF4P78317 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF4P78317 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF4P78317 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.58■□□□□ 0.89
RNF4P78317 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RNF4P78317 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.58■□□□□ 0.89
RNF4P78317 SUDS3P1-201ENST00000505831 966 ntBASIC20.58■□□□□ 0.89
RNF4P78317 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.58■□□□□ 0.89
RNF4P78317 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
RNF4P78317 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.58■□□□□ 0.88
RNF4P78317 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF4P78317 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.58■□□□□ 0.88
RNF4P78317 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF4P78317 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF4P78317 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF4P78317 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF4P78317 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF4P78317 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNF4P78317 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.57■□□□□ 0.88
RNF4P78317 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.57■□□□□ 0.88
RNF4P78317 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF4P78317 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF4P78317 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF4P78317 AC142381.2-201ENST00000566120 298 ntBASIC20.57■□□□□ 0.88
RNF4P78317 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF4P78317 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RNF4P78317 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF4P78317 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF4P78317 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF4P78317 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF4P78317 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 AC019069.1-201ENST00000610008 1333 ntBASIC20.55■□□□□ 0.88
RNF4P78317 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RNF4P78317 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF4P78317 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.55■□□□□ 0.88
RNF4P78317 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF4P78317 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.55■□□□□ 0.88
RNF4P78317 AP001330.3-201ENST00000520123 633 ntBASIC20.55■□□□□ 0.88
RNF4P78317 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF4P78317 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RNF4P78317 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF4P78317 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.54■□□□□ 0.88
RNF4P78317 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RNF4P78317 AF213884.3-201ENST00000563833 479 ntBASIC20.54■□□□□ 0.88
RNF4P78317 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
RNF4P78317 AL136967.2-201ENST00000623968 743 ntBASIC20.54■□□□□ 0.88
RNF4P78317 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RNF4P78317 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RNF4P78317 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF4P78317 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF4P78317 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF4P78317 MIR939-201ENST00000401314 82 ntBASIC20.53■□□□□ 0.88
RNF4P78317 BX842568.3-201ENST00000418104 571 ntBASIC20.53■□□□□ 0.88
RNF4P78317 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF4P78317 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF4P78317 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF4P78317 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
RNF4P78317 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF4P78317 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF4P78317 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RNF4P78317 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF4P78317 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF4P78317 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms