Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
VSX2P58304 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
VSX2P58304 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VSX2P58304 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VSX2P58304 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VSX2P58304 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX2P58304 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.25■□□□□ 0.99
VSX2P58304 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VSX2P58304 AC142381.2-201ENST00000566120 298 ntBASIC21.25■□□□□ 0.99
VSX2P58304 AL031432.3-201ENST00000607698 485 ntBASIC21.25■□□□□ 0.99
VSX2P58304 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
VSX2P58304 AL355001.2-201ENST00000620617 1191 ntBASIC21.25■□□□□ 0.99
VSX2P58304 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VSX2P58304 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX2P58304 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.25■□□□□ 0.99
VSX2P58304 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX2P58304 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.24■□□□□ 0.99
VSX2P58304 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.24■□□□□ 0.99
VSX2P58304 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VSX2P58304 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.24■□□□□ 0.99
VSX2P58304 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.24■□□□□ 0.99
VSX2P58304 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.24■□□□□ 0.99
VSX2P58304 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.24■□□□□ 0.99
VSX2P58304 AL499627.2-201ENST00000606283 725 ntBASIC21.24■□□□□ 0.99
VSX2P58304 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.24■□□□□ 0.99
VSX2P58304 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.24■□□□□ 0.99
VSX2P58304 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VSX2P58304 AC133637.1-201ENST00000624115 1537 ntBASIC21.24■□□□□ 0.99
VSX2P58304 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.23■□□□□ 0.99
VSX2P58304 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
VSX2P58304 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
VSX2P58304 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.23■□□□□ 0.99
VSX2P58304 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
VSX2P58304 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX2P58304 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
VSX2P58304 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
VSX2P58304 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 AF213884.3-201ENST00000563833 479 ntBASIC21.22■□□□□ 0.99
VSX2P58304 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
VSX2P58304 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VSX2P58304 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX2P58304 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
VSX2P58304 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VSX2P58304 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX2P58304 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.21■□□□□ 0.99
VSX2P58304 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX2P58304 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX2P58304 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.21■□□□□ 0.99
VSX2P58304 SUDS3P1-201ENST00000505831 966 ntBASIC21.21■□□□□ 0.99
VSX2P58304 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.21■□□□□ 0.99
VSX2P58304 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.21■□□□□ 0.99
VSX2P58304 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.21■□□□□ 0.99
VSX2P58304 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
VSX2P58304 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
VSX2P58304 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.21■□□□□ 0.99
VSX2P58304 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX2P58304 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VSX2P58304 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.21■□□□□ 0.99
VSX2P58304 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VSX2P58304 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX2P58304 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
VSX2P58304 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
VSX2P58304 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX2P58304 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.2■□□□□ 0.98
VSX2P58304 AP001330.3-201ENST00000520123 633 ntBASIC21.2■□□□□ 0.98
VSX2P58304 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.2■□□□□ 0.98
VSX2P58304 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.2■□□□□ 0.98
VSX2P58304 AC008764.7-201ENST00000593779 1081 ntBASIC21.2■□□□□ 0.98
VSX2P58304 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX2P58304 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX2P58304 AC092068.2-201ENST00000590491 1708 ntBASIC21.2■□□□□ 0.98
VSX2P58304 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.2■□□□□ 0.98
VSX2P58304 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.19■□□□□ 0.98
VSX2P58304 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
VSX2P58304 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.19■□□□□ 0.98
VSX2P58304 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
VSX2P58304 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX2P58304 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms