Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LIM2P55344 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIM2P55344 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIM2P55344 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIM2P55344 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LIM2P55344 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
LIM2P55344 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIM2P55344 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIM2P55344 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIM2P55344 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIM2P55344 AC008406.3-201ENST00000620001 1374 ntBASIC21.11■□□□□ 0.97
LIM2P55344 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.11■□□□□ 0.97
LIM2P55344 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIM2P55344 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.11■□□□□ 0.97
LIM2P55344 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIM2P55344 DUX4L4-201ENST00000566884 1269 ntBASIC21.11■□□□□ 0.97
LIM2P55344 AC099791.2-201ENST00000605725 427 ntBASIC21.11■□□□□ 0.97
LIM2P55344 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.11■□□□□ 0.97
LIM2P55344 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.11■□□□□ 0.97
LIM2P55344 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIM2P55344 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
LIM2P55344 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
LIM2P55344 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIM2P55344 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.1■□□□□ 0.97
LIM2P55344 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LIM2P55344 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.1■□□□□ 0.97
LIM2P55344 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.1■□□□□ 0.97
LIM2P55344 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
LIM2P55344 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.1■□□□□ 0.97
LIM2P55344 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.1■□□□□ 0.97
LIM2P55344 AC079834.2-201ENST00000609776 1949 ntBASIC21.1■□□□□ 0.97
LIM2P55344 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.09■□□□□ 0.97
LIM2P55344 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIM2P55344 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LIM2P55344 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIM2P55344 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LIM2P55344 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIM2P55344 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIM2P55344 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.09■□□□□ 0.97
LIM2P55344 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
LIM2P55344 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LIM2P55344 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LIM2P55344 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIM2P55344 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIM2P55344 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
LIM2P55344 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIM2P55344 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIM2P55344 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIM2P55344 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.08■□□□□ 0.97
LIM2P55344 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.08■□□□□ 0.97
LIM2P55344 AC009086.3-201ENST00000623486 1008 ntBASIC21.08■□□□□ 0.97
LIM2P55344 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.08■□□□□ 0.97
LIM2P55344 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
LIM2P55344 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.07■□□□□ 0.96
LIM2P55344 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.07■□□□□ 0.96
LIM2P55344 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.07■□□□□ 0.96
LIM2P55344 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
LIM2P55344 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
LIM2P55344 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIM2P55344 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.07■□□□□ 0.96
LIM2P55344 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.06■□□□□ 0.96
LIM2P55344 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.06■□□□□ 0.96
LIM2P55344 AC006455.2-201ENST00000429931 906 ntBASIC21.06■□□□□ 0.96
LIM2P55344 AC092171.4-201ENST00000609130 632 ntBASIC21.06■□□□□ 0.96
LIM2P55344 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LIM2P55344 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIM2P55344 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIM2P55344 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
LIM2P55344 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.05■□□□□ 0.96
LIM2P55344 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIM2P55344 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIM2P55344 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIM2P55344 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.05■□□□□ 0.96
LIM2P55344 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.05■□□□□ 0.96
LIM2P55344 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.05■□□□□ 0.96
LIM2P55344 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.05■□□□□ 0.96
LIM2P55344 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.05■□□□□ 0.96
LIM2P55344 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LIM2P55344 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIM2P55344 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIM2P55344 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIM2P55344 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.04■□□□□ 0.96
LIM2P55344 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.04■□□□□ 0.96
LIM2P55344 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIM2P55344 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
LIM2P55344 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIM2P55344 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.04■□□□□ 0.96
LIM2P55344 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms