Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.08■□□□□ 0.97
PROM1O43490 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PROM1O43490 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PROM1O43490 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.08■□□□□ 0.97
PROM1O43490 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PROM1O43490 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PROM1O43490 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.08■□□□□ 0.96
PROM1O43490 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.08■□□□□ 0.96
PROM1O43490 CLDN5-201ENST00000403084 2357 ntBASIC21.08■□□□□ 0.96
PROM1O43490 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PROM1O43490 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
PROM1O43490 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.07■□□□□ 0.96
PROM1O43490 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PROM1O43490 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
PROM1O43490 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PROM1O43490 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PROM1O43490 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.07■□□□□ 0.96
PROM1O43490 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.07■□□□□ 0.96
PROM1O43490 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PROM1O43490 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PROM1O43490 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.06■□□□□ 0.96
PROM1O43490 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.06■□□□□ 0.96
PROM1O43490 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PROM1O43490 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PROM1O43490 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PROM1O43490 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.06■□□□□ 0.96
PROM1O43490 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PROM1O43490 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PROM1O43490 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PROM1O43490 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PROM1O43490 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.05■□□□□ 0.96
PROM1O43490 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.05■□□□□ 0.96
PROM1O43490 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.05■□□□□ 0.96
PROM1O43490 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PROM1O43490 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.05■□□□□ 0.96
PROM1O43490 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.05■□□□□ 0.96
PROM1O43490 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.05■□□□□ 0.96
PROM1O43490 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.05■□□□□ 0.96
PROM1O43490 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.05■□□□□ 0.96
PROM1O43490 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PROM1O43490 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PROM1O43490 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PROM1O43490 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PROM1O43490 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PROM1O43490 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PROM1O43490 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PROM1O43490 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PROM1O43490 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.04■□□□□ 0.96
PROM1O43490 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PROM1O43490 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.04■□□□□ 0.96
PROM1O43490 MIR935-201ENST00000401179 91 ntBASIC21.04■□□□□ 0.96
PROM1O43490 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.04■□□□□ 0.96
PROM1O43490 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.04■□□□□ 0.96
PROM1O43490 AC241377.3-202ENST00000626088 1088 ntBASIC21.04■□□□□ 0.96
PROM1O43490 AC241585.3-202ENST00000628937 1088 ntBASIC21.04■□□□□ 0.96
PROM1O43490 AC245100.8-202ENST00000629247 1058 ntBASIC21.04■□□□□ 0.96
PROM1O43490 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.04■□□□□ 0.96
PROM1O43490 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PROM1O43490 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PROM1O43490 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PROM1O43490 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PROM1O43490 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PROM1O43490 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.03■□□□□ 0.96
PROM1O43490 MIR4466-201ENST00000606121 54 ntBASIC21.03■□□□□ 0.96
PROM1O43490 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
PROM1O43490 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PROM1O43490 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.03■□□□□ 0.96
PROM1O43490 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.03■□□□□ 0.96
PROM1O43490 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
PROM1O43490 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.02■□□□□ 0.96
PROM1O43490 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.02■□□□□ 0.96
PROM1O43490 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PROM1O43490 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PROM1O43490 AC131281.2-201ENST00000520478 145 ntBASIC21.02■□□□□ 0.96
PROM1O43490 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.02■□□□□ 0.96
PROM1O43490 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PROM1O43490 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PROM1O43490 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PROM1O43490 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.02■□□□□ 0.96
PROM1O43490 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
PROM1O43490 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.01■□□□□ 0.95
PROM1O43490 SRD5A1P1-201ENST00000442297 786 ntBASIC21.01■□□□□ 0.95
PROM1O43490 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.01■□□□□ 0.95
PROM1O43490 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PROM1O43490 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.01■□□□□ 0.95
PROM1O43490 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
PROM1O43490 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PROM1O43490 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PROM1O43490 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PROM1O43490 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PROM1O43490 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21■□□□□ 0.95
PROM1O43490 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PROM1O43490 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21■□□□□ 0.95
PROM1O43490 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms