Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC022517.1-201ENST00000592429 346 ntBASIC29.64■■■□□ 2.34
MSH5O43196 AC099791.2-201ENST00000605725 427 ntBASIC29.64■■■□□ 2.34
MSH5O43196 SP2-202ENST00000613139 908 ntTSL 5 BASIC29.64■■■□□ 2.34
MSH5O43196 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC29.64■■■□□ 2.34
MSH5O43196 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
MSH5O43196 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
MSH5O43196 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
MSH5O43196 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH5O43196 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.63■■■□□ 2.33
MSH5O43196 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH5O43196 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC29.63■■■□□ 2.33
MSH5O43196 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.63■■■□□ 2.33
MSH5O43196 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC29.63■■■□□ 2.33
MSH5O43196 AL137784.2-201ENST00000607332 1000 ntBASIC29.63■■■□□ 2.33
MSH5O43196 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
MSH5O43196 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH5O43196 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH5O43196 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
MSH5O43196 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH5O43196 EP400NL-214ENST00000641289 2402 ntBASIC29.62■■■□□ 2.33
MSH5O43196 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH5O43196 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.62■■■□□ 2.33
MSH5O43196 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH5O43196 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC29.62■■■□□ 2.33
MSH5O43196 AL078595.1-201ENST00000404458 226 ntBASIC29.62■■■□□ 2.33
MSH5O43196 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH5O43196 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC29.62■■■□□ 2.33
MSH5O43196 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH5O43196 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
MSH5O43196 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC29.62■■■□□ 2.33
MSH5O43196 AC016180.1-201ENST00000567945 403 ntBASIC29.61■■■□□ 2.33
MSH5O43196 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH5O43196 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH5O43196 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC29.61■■■□□ 2.33
MSH5O43196 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC29.61■■■□□ 2.33
MSH5O43196 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH5O43196 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH5O43196 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH5O43196 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC29.6■■■□□ 2.33
MSH5O43196 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC29.6■■■□□ 2.33
MSH5O43196 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
MSH5O43196 AC017007.3-201ENST00000479865 435 ntBASIC29.6■■■□□ 2.33
MSH5O43196 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC29.6■■■□□ 2.33
MSH5O43196 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH5O43196 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC29.6■■■□□ 2.33
MSH5O43196 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.6■■■□□ 2.33
MSH5O43196 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH5O43196 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.6■■■□□ 2.33
MSH5O43196 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC29.6■■■□□ 2.33
MSH5O43196 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH5O43196 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH5O43196 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.59■■■□□ 2.33
MSH5O43196 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC29.59■■■□□ 2.33
MSH5O43196 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC29.59■■■□□ 2.33
MSH5O43196 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
MSH5O43196 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH5O43196 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
MSH5O43196 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH5O43196 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH5O43196 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH5O43196 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC29.58■■■□□ 2.33
MSH5O43196 AC034268.1-201ENST00000441047 882 ntBASIC29.58■■■□□ 2.33
MSH5O43196 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
MSH5O43196 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
MSH5O43196 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.57■■■□□ 2.32
MSH5O43196 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC29.57■■■□□ 2.32
MSH5O43196 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH5O43196 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC29.57■■■□□ 2.32
MSH5O43196 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC29.57■■■□□ 2.32
MSH5O43196 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH5O43196 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC29.57■■■□□ 2.32
MSH5O43196 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH5O43196 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH5O43196 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
MSH5O43196 AL117328.2-201ENST00000624617 1940 ntBASIC29.56■■■□□ 2.32
MSH5O43196 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC29.56■■■□□ 2.32
MSH5O43196 AL845331.1-201ENST00000424978 1190 ntBASIC29.56■■■□□ 2.32
MSH5O43196 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
MSH5O43196 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC29.56■■■□□ 2.32
MSH5O43196 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC29.55■■■□□ 2.32
MSH5O43196 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH5O43196 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
MSH5O43196 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH5O43196 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC29.55■■■□□ 2.32
MSH5O43196 AC011298.3-201ENST00000615796 283 ntBASIC29.55■■■□□ 2.32
MSH5O43196 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC29.55■■■□□ 2.32
MSH5O43196 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH5O43196 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
MSH5O43196 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC29.54■■■□□ 2.32
MSH5O43196 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH5O43196 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
MSH5O43196 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH5O43196 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.54■■■□□ 2.32
MSH5O43196 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.54■■■□□ 2.32
MSH5O43196 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
MSH5O43196 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.54■■■□□ 2.32
MSH5O43196 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
MSH5O43196 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
MSH5O43196 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
MSH5O43196 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.53■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms