RNA–Protein interactions for RNA: ENST00000273286.5

LRTM1-201, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRTM1, Length 1,423 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-201ENST00000273286 AEBP2Q6ZN18 517 aaPredicted RBP40.08■■■■■ 4.01
LRTM1-201ENST00000273286 CHIC1Q5VXU3 224 aa38.48■■■■□ 3.75
LRTM1-201ENST00000273286 SENP3Q9H4L4 574 aaPredicted RBP34.13■■■■□ 3.05
LRTM1-201ENST00000273286 PHF23Q9BUL5 403 aaPredicted RBP33.76■■■□□ 2.99
LRTM1-201ENST00000273286 FOXD1Q16676 465 aa31.75■■■□□ 2.67
LRTM1-201ENST00000273286 PLPPR3Q6T4P5 718 aa30.96■■■□□ 2.55
LRTM1-201ENST00000273286 PPP6R1Q9UPN7 881 aa30.01■■■□□ 2.39
LRTM1-201ENST00000273286 ADRA2BP18089 450 aa29.97■■■□□ 2.39
LRTM1-201ENST00000273286 PIAS4Q8N2W9 510 aaPredicted RBP29.81■■■□□ 2.36
LRTM1-201ENST00000273286 MSH5O43196 834 aa29.55■■■□□ 2.32
LRTM1-201ENST00000273286 POTEDQ86YR6 584 aa28.1■■■□□ 2.09
LRTM1-201ENST00000273286 SCAF1Q9H7N4 1312 aaKnown RBP27.41■■□□□ 1.98
LRTM1-201ENST00000273286 MAPK8IP2Q13387 824 aaPredicted RBP27.39■■□□□ 1.97
LRTM1-201ENST00000273286 PPP4R3CPQ6ZMV5 832 aa27.2■■□□□ 1.94
LRTM1-201ENST00000273286 DMRT2Q9Y5R5 561 aa27.12■■□□□ 1.93
LRTM1-201ENST00000273286 CNKSR2Q8WXI2 1034 aa26.57■■□□□ 1.84
LRTM1-201ENST00000273286 HOXD11P31277 338 aaPredicted RBP26.29■■□□□ 1.8
LRTM1-201ENST00000273286 NCBP3Q53F19 620 aaKnown RBP26.29■■□□□ 1.8
LRTM1-201ENST00000273286 RNF216Q9NWF9 866 aaPredicted RBP26.22■■□□□ 1.79
LRTM1-201ENST00000273286 DCAF8L1A6NGE4 600 aa26.06■■□□□ 1.76
LRTM1-201ENST00000273286 NPM3O75607 178 aaKnown RBP25.9■■□□□ 1.74
LRTM1-201ENST00000273286 KCNA4P22459 653 aa25.81■■□□□ 1.72
LRTM1-201ENST00000273286 RNF39Q9H2S5 420 aa25.25■■□□□ 1.63
LRTM1-201ENST00000273286 DNAJC5BQ9UF47 199 aa25.25■■□□□ 1.63
LRTM1-201ENST00000273286 CACNB1Q02641 598 aaPredicted RBP25.12■■□□□ 1.61
LRTM1-201ENST00000273286 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.09■■□□□ 1.61
LRTM1-201ENST00000273286 C1QBPQ07021 282 aaKnown RBP24.9■■□□□ 1.58
LRTM1-201ENST00000273286 SLC4A2P04920 1241 aa24.61■■□□□ 1.53
LRTM1-201ENST00000273286 U3KPZ7 1027 aaPredicted RBP24.61■■□□□ 1.53
LRTM1-201ENST00000273286 SLC4A1APQ9BWU0 796 aaKnown RBP24.46■■□□□ 1.51
LRTM1-201ENST00000273286 SPINK5Q9NQ38 1064 aaPredicted RBP24.13■■□□□ 1.45
LRTM1-201ENST00000273286 NISCHQ9Y2I1 1504 aa24.11■■□□□ 1.45
LRTM1-201ENST00000273286 CAPN15O75808 1086 aa24.09■■□□□ 1.45
LRTM1-201ENST00000273286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.04■■□□□ 1.44
LRTM1-201ENST00000273286 HNRNPUL2Q1KMD3 747 aaKnown RBP24.04■■□□□ 1.44
LRTM1-201ENST00000273286 MYCNP04198 464 aaPredicted RBP23.97■■□□□ 1.43
LRTM1-201ENST00000273286 APLP2Q06481 763 aa23.97■■□□□ 1.43
LRTM1-201ENST00000273286 FOXD4L1Q9NU39 408 aa23.94■■□□□ 1.42
LRTM1-201ENST00000273286 SAMD1Q6SPF0 538 aaPredicted RBP23.93■■□□□ 1.42
LRTM1-201ENST00000273286 TRHP20396 242 aaPredicted RBP23.81■■□□□ 1.4
LRTM1-201ENST00000273286 DSG3P32926 999 aa23.79■■□□□ 1.4
LRTM1-201ENST00000273286 ZNF219Q9P2Y4 722 aaPredicted RBP23.76■■□□□ 1.39
LRTM1-201ENST00000273286 ZBTB22O15209 634 aa23.73■■□□□ 1.39
LRTM1-201ENST00000273286 ABCB7O75027 752 aa23.58■■□□□ 1.36
LRTM1-201ENST00000273286 ATF5Q9Y2D1 282 aaPredicted RBP23.36■■□□□ 1.33
LRTM1-201ENST00000273286 POLA2Q14181 598 aa23.23■■□□□ 1.31
LRTM1-201ENST00000273286 ATXN8OSP0DMR3 200 aa23.14■■□□□ 1.29
LRTM1-201ENST00000273286 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
LRTM1-201ENST00000273286 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
LRTM1-201ENST00000273286 ZBTB12Q9Y330 459 aaPredicted RBP22.81■■□□□ 1.24
LRTM1-201ENST00000273286 RBM42Q9BTD8 480 aaKnown RBP22.72■■□□□ 1.23
LRTM1-201ENST00000273286 OSCARQ8IYS5 282 aa22.5■■□□□ 1.19
LRTM1-201ENST00000273286 FBLN2P98095 1184 aa22.45■■□□□ 1.18
LRTM1-201ENST00000273286 MKRN4PQ13434 485 aaPredicted RBP22.31■■□□□ 1.16
LRTM1-201ENST00000273286 AKT1S1Q96B36 256 aa22.27■■□□□ 1.16
LRTM1-201ENST00000273286 SPDYE2BA6NHP3 402 aa22.13■■□□□ 1.13
LRTM1-201ENST00000273286 SPDYE6P0CI01 402 aa22.13■■□□□ 1.13
LRTM1-201ENST00000273286 SPDYE2Q495Y8 402 aa22.13■■□□□ 1.13
LRTM1-201ENST00000273286 POTEHQ6S545 545 aa22.12■■□□□ 1.13
LRTM1-201ENST00000273286 REM2Q8IYK8 340 aaPredicted RBP22.06■■□□□ 1.12
LRTM1-201ENST00000273286 CHRDL2Q6WN34 429 aa22.05■■□□□ 1.12
LRTM1-201ENST00000273286 ZNF692Q9BU19 519 aaPredicted RBP21.94■■□□□ 1.1
LRTM1-201ENST00000273286 SSUH2Q9Y2M2 353 aa21.88■■□□□ 1.09
LRTM1-201ENST00000273286 PITPNM1O00562 1244 aa21.84■■□□□ 1.09
LRTM1-201ENST00000273286 CCDC180Q9P1Z9 1646 aa21.71■■□□□ 1.07
LRTM1-201ENST00000273286 SPDYE1Q8NFV5 336 aaPredicted RBP21.65■■□□□ 1.06
LRTM1-201ENST00000273286 PABPN1Q86U42 306 aaKnown RBP eCLIP21.64■■□□□ 1.06
LRTM1-201ENST00000273286 ABCC9O60706 1549 aa21.62■■□□□ 1.05
LRTM1-201ENST00000273286 CLEC11AQ9Y240 323 aa21.62■■□□□ 1.05
LRTM1-201ENST00000273286 PIP4P2Q8N4L2 257 aa21.61■■□□□ 1.05
LRTM1-201ENST00000273286 FXR2P51116 673 aaKnown RBP eCLIP21.53■■□□□ 1.04
LRTM1-201ENST00000273286 SPDYE4A6NLX3 237 aa21.5■■□□□ 1.03
LRTM1-201ENST00000273286 PRR29P0C7W0 189 aa21.29■■□□□ 1
LRTM1-201ENST00000273286 PRKAR2AP13861 404 aaKnown RBP21.29■■□□□ 1
LRTM1-201ENST00000273286 CHADLQ6NUI6 762 aa21.15■□□□□ 0.98
LRTM1-201ENST00000273286 STAG3Q9UJ98 1225 aa21.12■□□□□ 0.97
LRTM1-201ENST00000273286 HAX1O00165 279 aa21.12■□□□□ 0.97
LRTM1-201ENST00000273286 PROM2Q8N271 834 aa21■□□□□ 0.95
LRTM1-201ENST00000273286 SP7Q8TDD2 431 aaPredicted RBP20.94■□□□□ 0.94
LRTM1-201ENST00000273286 FKBP8Q14318 412 aa20.89■□□□□ 0.94
LRTM1-201ENST00000273286 EVX2Q03828 476 aa20.86■□□□□ 0.93
LRTM1-201ENST00000273286 CREBZFQ9NS37 354 aa20.86■□□□□ 0.93
LRTM1-201ENST00000273286 FARP1Q9Y4F1 1045 aaPredicted RBP20.86■□□□□ 0.93
LRTM1-201ENST00000273286 C19orf67A6NJJ6 358 aa20.83■□□□□ 0.93
LRTM1-201ENST00000273286 RB1CC1Q8TDY2 1594 aa20.67■□□□□ 0.9
LRTM1-201ENST00000273286 CD44P16070 742 aaKnown RBP20.65■□□□□ 0.9
LRTM1-201ENST00000273286 MNX1P50219 401 aaPredicted RBP20.54■□□□□ 0.88
LRTM1-201ENST00000273286 NACADO15069 1562 aa20.53■□□□□ 0.88
LRTM1-201ENST00000273286 NPM1P06748 294 aaKnown RBP eCLIP20.5■□□□□ 0.87
LRTM1-201ENST00000273286 MIER1Q8N108 512 aa20.46■□□□□ 0.87
LRTM1-201ENST00000273286 GABBR2O75899 941 aa20.42■□□□□ 0.86
LRTM1-201ENST00000273286 PLEKHG5O94827 1062 aa20.42■□□□□ 0.86
LRTM1-201ENST00000273286 ZRANB1Q9UGI0 708 aa20.42■□□□□ 0.86
LRTM1-201ENST00000273286 PLCD3Q8N3E9 789 aa20.37■□□□□ 0.85
LRTM1-201ENST00000273286 PAK3O75914 559 aaPredicted RBP20.36■□□□□ 0.85
LRTM1-201ENST00000273286 ZNF579Q8NAF0 562 aaKnown RBP20.33■□□□□ 0.84
LRTM1-201ENST00000273286 FBXO3Q9UK99 471 aa20.31■□□□□ 0.84
LRTM1-201ENST00000273286 MYO15BQ96JP2 1530 aa20.29■□□□□ 0.84
LRTM1-201ENST00000273286 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
LRTM1-201ENST00000273286 CLCN6P51797 869 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms