Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.06■□□□□ 0.96
PDLIM1O00151 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM1O00151 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM1O00151 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.06■□□□□ 0.96
PDLIM1O00151 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM1O00151 AC074183.2-201ENST00000623112 922 ntBASIC21.06■□□□□ 0.96
PDLIM1O00151 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
PDLIM1O00151 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM1O00151 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM1O00151 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM1O00151 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.06■□□□□ 0.96
PDLIM1O00151 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.05■□□□□ 0.96
PDLIM1O00151 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.05■□□□□ 0.96
PDLIM1O00151 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM1O00151 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.05■□□□□ 0.96
PDLIM1O00151 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.05■□□□□ 0.96
PDLIM1O00151 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM1O00151 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM1O00151 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM1O00151 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM1O00151 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM1O00151 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.05■□□□□ 0.96
PDLIM1O00151 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.04■□□□□ 0.96
PDLIM1O00151 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
PDLIM1O00151 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
PDLIM1O00151 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.04■□□□□ 0.96
PDLIM1O00151 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PDLIM1O00151 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.04■□□□□ 0.96
PDLIM1O00151 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.04■□□□□ 0.96
PDLIM1O00151 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.04■□□□□ 0.96
PDLIM1O00151 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PDLIM1O00151 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM1O00151 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.04■□□□□ 0.96
PDLIM1O00151 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PDLIM1O00151 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.03■□□□□ 0.96
PDLIM1O00151 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PDLIM1O00151 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDLIM1O00151 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.03■□□□□ 0.96
PDLIM1O00151 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.03■□□□□ 0.96
PDLIM1O00151 AC139795.1-202ENST00000500444 432 ntBASIC21.03■□□□□ 0.96
PDLIM1O00151 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.03■□□□□ 0.96
PDLIM1O00151 AL161729.1-201ENST00000604104 1402 ntBASIC21.03■□□□□ 0.96
PDLIM1O00151 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.02■□□□□ 0.96
PDLIM1O00151 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
PDLIM1O00151 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
PDLIM1O00151 AL391422.3-201ENST00000603791 2761 ntBASIC21.02■□□□□ 0.96
PDLIM1O00151 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM1O00151 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM1O00151 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.02■□□□□ 0.96
PDLIM1O00151 AC019171.1-201ENST00000601251 1056 ntBASIC21.02■□□□□ 0.96
PDLIM1O00151 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM1O00151 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM1O00151 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PDLIM1O00151 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
PDLIM1O00151 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
PDLIM1O00151 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.02■□□□□ 0.95
PDLIM1O00151 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 LONRF2P2-201ENST00000439212 571 ntBASIC21.01■□□□□ 0.95
PDLIM1O00151 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.01■□□□□ 0.95
PDLIM1O00151 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM1O00151 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21■□□□□ 0.95
PDLIM1O00151 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 AC010980.1-201ENST00000587192 1142 ntBASIC21■□□□□ 0.95
PDLIM1O00151 BHLHE23-202ENST00000612929 1109 ntBASIC21■□□□□ 0.95
PDLIM1O00151 PVT1_1.1-201ENST00000615125 194 ntBASIC21■□□□□ 0.95
PDLIM1O00151 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PDLIM1O00151 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PDLIM1O00151 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM1O00151 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PDLIM1O00151 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM1O00151 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.99■□□□□ 0.95
PDLIM1O00151 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM1O00151 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.99■□□□□ 0.95
PDLIM1O00151 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM1O00151 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM1O00151 ESRRAP2-201ENST00000418437 1549 ntBASIC20.99■□□□□ 0.95
PDLIM1O00151 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM1O00151 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms