Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
SUMO3P55854 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 GBAP1-208ENST00000566701 1546 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 Z98257.2-202ENST00000641138 1548 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
SUMO3P55854 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 AC004837.1-201ENST00000446267 564 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.29□□□□□ -0.44
SUMO3P55854 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC12.29□□□□□ -0.44
SUMO3P55854 FAM213AP2-201ENST00000521579 683 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC12.29□□□□□ -0.44
SUMO3P55854 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
SUMO3P55854 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC12.29□□□□□ -0.44
SUMO3P55854 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 AP000553.2-201ENST00000609038 441 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 AC105137.3-201ENST00000617588 984 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 PTN-202ENST00000393083 1599 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 DGCR9-201ENST00000609630 2415 ntBASIC12.29□□□□□ -0.44
SUMO3P55854 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC12.29□□□□□ -0.44
SUMO3P55854 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SUMO3P55854 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC12.29□□□□□ -0.44
SUMO3P55854 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.29□□□□□ -0.44
SUMO3P55854 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
SUMO3P55854 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC12.28□□□□□ -0.44
SUMO3P55854 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
SUMO3P55854 AC115284.2-201ENST00000624646 2054 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
SUMO3P55854 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 SRL-202ENST00000537996 1814 ntTSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 AC091807.1-201ENST00000418838 1544 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 SSR4P1-201ENST00000415143 412 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 FAM21EP-201ENST00000417804 985 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 PSAT1P2-201ENST00000426107 972 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 RN7SL8P-201ENST00000461771 266 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 RPL29P2-202ENST00000498671 657 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC12.28□□□□□ -0.44
SUMO3P55854 RPS23-207ENST00000511844 530 ntTSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC12.28□□□□□ -0.44
SUMO3P55854 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 FOXN3-AS2-201ENST00000554071 1262 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 MT2A-202ENST00000561491 581 ntTSL 2 BASIC12.28□□□□□ -0.44
SUMO3P55854 FAM187B2P-201ENST00000577135 713 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC12.28□□□□□ -0.44
SUMO3P55854 AC026304.1-201ENST00000597953 561 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 AC018635.2-201ENST00000608625 364 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
SUMO3P55854 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC12.28□□□□□ -0.44
SUMO3P55854 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 GHET1-201ENST00000627071 1906 ntBASIC12.28□□□□□ -0.44
SUMO3P55854 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SUMO3P55854 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms