Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC026803.1-201ENST00000569130 274 ntBASIC13.19□□□□□ -0.3
FOXA1P55317 RN7SL219P-201ENST00000582872 296 ntBASIC13.19□□□□□ -0.3
FOXA1P55317 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 FAM131B-204ENST00000409578 4286 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 TRMT10B-203ENST00000377754 1881 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 LINC01624-203ENST00000607074 3265 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 AC006144.1-201ENST00000424220 1600 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 ALDH1A2-204ENST00000537372 3700 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 ANKRA2-201ENST00000296785 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 OR2K2-202ENST00000374428 1038 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA1P55317 PDIA3P2-201ENST00000428073 158 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.18□□□□□ -0.3
FOXA1P55317 IL2RG-204ENST00000456850 540 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA1P55317 SAA2-206ENST00000530400 323 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA1P55317 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA1P55317 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA1P55317 AC020914.3-201ENST00000594712 304 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 AC239800.4-201ENST00000603712 296 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.18□□□□□ -0.3
FOXA1P55317 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC13.18□□□□□ -0.3
FOXA1P55317 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 LINC00563-201ENST00000566370 1400 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 MFSD11-201ENST00000336509 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 AC006372.4-201ENST00000624122 1543 ntBASIC13.18□□□□□ -0.3
FOXA1P55317 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
FOXA1P55317 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 PRIMPOL-201ENST00000314970 2289 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA1P55317 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA1P55317 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA1P55317 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC13.17□□□□□ -0.3
FOXA1P55317 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
FOXA1P55317 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.17□□□□□ -0.3
FOXA1P55317 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
FOXA1P55317 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
FOXA1P55317 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
FOXA1P55317 MIR557-201ENST00000385239 98 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
FOXA1P55317 CFL1P6-201ENST00000400899 494 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FOXA1P55317 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
FOXA1P55317 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 DUTP3-201ENST00000450025 415 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 BX284668.4-201ENST00000453917 508 ntBASIC13.17□□□□□ -0.3
FOXA1P55317 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.17□□□□□ -0.3
FOXA1P55317 HIST2H2BC-201ENST00000498492 580 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms