Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 AC010976.2-201ENST00000609697 852 ntBASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 AL118522.1-201ENST00000611368 560 ntBASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 AP001184.1-201ENST00000637936 376 ntBASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 POM121L4P-202ENST00000427789 1891 ntBASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SHROOM3Q8TF72 AC060814.4-201ENST00000594169 2163 ntBASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 ZSCAN5DP-201ENST00000600684 1488 ntBASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 HNRNPA1P33-201ENST00000421426 561 ntBASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 HINT1-205ENST00000508488 703 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PTPN20CP-201ENST00000614090 920 ntBASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 FTX-216ENST00000638985 1367 ntTSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.88□□□□□ -0.19
SHROOM3Q8TF72 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 U3.5-201ENST00000363448 216 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AL592076.1-201ENST00000424448 303 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 KRT17P4-201ENST00000429445 819 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 CXXC1P1-202ENST00000489409 1212 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AC004686.1-201ENST00000605113 538 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 COQ4-204ENST00000608951 781 ntTSL 2 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AC138466.5-201ENST00000624002 808 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 LINC00431-202ENST00000636375 159 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 OS9-218ENST00000551035 2246 ntTSL 2 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AC102953.2-201ENST00000609755 3026 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 AC103563.1-201ENST00000429316 123 ntBASIC13.87□□□□□ -0.19
SHROOM3Q8TF72 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms