Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.42■□□□□ 0.06
TPM4P67936 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 GNG4-204ENST00000450593 4978 ntAPPRIS P1 TSL 4 BASIC15.42■□□□□ 0.06
TPM4P67936 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 TBL1X-202ENST00000380961 4674 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
TPM4P67936 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.42■□□□□ 0.06
TPM4P67936 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.42■□□□□ 0.06
TPM4P67936 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 TUBB8P8-201ENST00000458717 1058 ntBASIC15.42■□□□□ 0.06
TPM4P67936 AC092183.1-201ENST00000469884 875 ntBASIC15.42■□□□□ 0.06
TPM4P67936 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
TPM4P67936 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.42■□□□□ 0.06
TPM4P67936 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.42■□□□□ 0.06
TPM4P67936 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.42■□□□□ 0.06
TPM4P67936 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 DLGAP2-214ENST00000612087 10088 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
TPM4P67936 AL031432.4-201ENST00000641729 2190 ntBASIC15.42■□□□□ 0.06
TPM4P67936 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC15.42■□□□□ 0.06
TPM4P67936 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC15.42■□□□□ 0.06
TPM4P67936 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TPM4P67936 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 RAB8B-201ENST00000321437 4943 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 ZFR-201ENST00000265069 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TPM4P67936 AL512384.1-201ENST00000406683 331 ntBASIC15.41■□□□□ 0.06
TPM4P67936 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.41■□□□□ 0.06
TPM4P67936 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 SPCS2P1-201ENST00000561636 679 ntBASIC15.41■□□□□ 0.06
TPM4P67936 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 AP001462.1-201ENST00000594089 452 ntBASIC15.41■□□□□ 0.06
TPM4P67936 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 AP000346.4-201ENST00000614827 381 ntBASIC15.41■□□□□ 0.06
TPM4P67936 AL358472.5-202ENST00000641448 1267 ntBASIC15.41■□□□□ 0.06
TPM4P67936 TMEM164-204ENST00000372073 5567 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 KDM7A-201ENST00000397560 9272 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 PDP1-202ENST00000396200 4358 ntAPPRIS ALT1 TSL 4 BASIC15.41■□□□□ 0.06
TPM4P67936 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC15.41■□□□□ 0.06
TPM4P67936 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 PLEKHG2-203ENST00000425673 8132 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
TPM4P67936 LIN54-201ENST00000340417 6127 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 ZNF473-205ENST00000595661 4828 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 GPR179-204ENST00000621958 7983 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TPM4P67936 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TPM4P67936 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms