Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 OR10N1P-201ENST00000392758 869 ntBASIC13.26□□□□□ -0.29
COL28A1Q2UY09 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AC092903.1-201ENST00000466506 262 ntBASIC13.26□□□□□ -0.29
COL28A1Q2UY09 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ISL1-203ENST00000511384 981 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 NT5C-204ENST00000578337 582 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AL133467.4-201ENST00000602953 725 ntBASIC13.26□□□□□ -0.29
COL28A1Q2UY09 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 COQ4-204ENST00000608951 781 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AL031595.1-201ENST00000623969 4709 ntBASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 MIR611-201ENST00000384869 67 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SNRPCP15-201ENST00000424055 192 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 AL773545.2-201ENST00000442149 472 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 STK24P1-201ENST00000455035 1291 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 AC147876.1-201ENST00000504408 322 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ACY3-202ENST00000529256 933 ntTSL 3 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ANKRD26P1-203ENST00000569528 966 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ACTBP9-201ENST00000587663 1099 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 AL359091.4-201ENST00000610052 409 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 HSPA8P5-201ENST00000456928 2069 ntBASIC13.25□□□□□ -0.29
COL28A1Q2UY09 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL28A1Q2UY09 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 DMBT1P1-203ENST00000636837 4628 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.24□□□□□ -0.29
COL28A1Q2UY09 AC020910.6-201ENST00000623084 1459 ntBASIC13.24□□□□□ -0.29
COL28A1Q2UY09 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms