Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
CNOT4O95628 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
CNOT4O95628 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 MIR1307-201ENST00000408840 149 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.3□□□□□ -0.44
CNOT4O95628 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC12.3□□□□□ -0.44
CNOT4O95628 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 RPL18AP3-201ENST00000462885 528 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 RPS23-204ENST00000507980 836 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 RNA5SP417-201ENST00000516459 108 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 KRT8P2-201ENST00000556193 944 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC12.3□□□□□ -0.44
CNOT4O95628 RPL17P45-201ENST00000586289 509 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 MIR6756-201ENST00000616240 63 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 MIR6858-201ENST00000620733 67 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 AL161773.1-201ENST00000624845 863 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 AL132780.4-201ENST00000624870 1135 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 GARS-210ENST00000627489 324 ntTSL 4 BASIC12.3□□□□□ -0.44
CNOT4O95628 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 CICP17-201ENST00000418553 2377 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 AC089987.1-201ENST00000551654 2209 ntBASIC12.3□□□□□ -0.44
CNOT4O95628 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 VAX1-201ENST00000277905 4494 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.3□□□□□ -0.44
CNOT4O95628 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.3□□□□□ -0.44
CNOT4O95628 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CNOT4O95628 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 AF013593.1-201ENST00000458074 1487 ntBASIC12.29□□□□□ -0.44
CNOT4O95628 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.29□□□□□ -0.44
CNOT4O95628 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 DKKL1P1-201ENST00000400550 698 ntBASIC12.29□□□□□ -0.44
CNOT4O95628 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
CNOT4O95628 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC12.29□□□□□ -0.44
CNOT4O95628 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 CD81-209ENST00000492627 886 ntTSL 3 BASIC12.29□□□□□ -0.44
CNOT4O95628 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC12.29□□□□□ -0.44
CNOT4O95628 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC12.29□□□□□ -0.44
CNOT4O95628 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC12.29□□□□□ -0.44
CNOT4O95628 AC005357.2-202ENST00000590507 1060 ntBASIC12.29□□□□□ -0.44
CNOT4O95628 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC12.29□□□□□ -0.44
CNOT4O95628 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CNOT4O95628 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CNOT4O95628 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms