Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AP002353.1-201ENST00000528257 1599 ntBASIC13.28□□□□□ -0.28
COL28A1Q2UY09 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.28□□□□□ -0.28
COL28A1Q2UY09 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL28A1Q2UY09 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AP000244.1-201ENST00000424582 201 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AL161932.2-201ENST00000435436 679 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 SLC25A15P1-201ENST00000456738 342 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 TPT1P6-201ENST00000458298 514 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 RN7SL173P-201ENST00000461853 292 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 SLC25A15P3-201ENST00000505530 290 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 MYL6-215ENST00000549566 685 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 RN7SL524P-201ENST00000581152 300 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 CSTP2-201ENST00000610599 398 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AC064801.2-201ENST00000625052 1303 ntBASIC13.27□□□□□ -0.29
COL28A1Q2UY09 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL28A1Q2UY09 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.26□□□□□ -0.29
COL28A1Q2UY09 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms