Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 AC005730.2-201ENST00000564549 1184 ntBASIC13.06□□□□□ -0.32
CLK1P49759 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.06□□□□□ -0.32
CLK1P49759 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.06□□□□□ -0.32
CLK1P49759 AC005695.3-201ENST00000614522 232 ntBASIC13.06□□□□□ -0.32
CLK1P49759 AC022748.3-201ENST00000621828 275 ntBASIC13.06□□□□□ -0.32
CLK1P49759 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.06□□□□□ -0.32
CLK1P49759 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 XIRP1-201ENST00000340369 6460 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 FAM225A-202ENST00000453010 5625 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 GRHL2-201ENST00000251808 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 DDC-214ENST00000622873 1839 ntTSL 3 BASIC13.06□□□□□ -0.32
CLK1P49759 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 BX324167.2-201ENST00000623717 3316 ntBASIC13.06□□□□□ -0.32
CLK1P49759 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 AC004899.1-201ENST00000424687 1714 ntBASIC13.05□□□□□ -0.32
CLK1P49759 AL928654.5-201ENST00000624831 2501 ntBASIC13.05□□□□□ -0.32
CLK1P49759 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 USP17L6P-201ENST00000382470 1197 ntBASIC13.05□□□□□ -0.32
CLK1P49759 VDAC1P1-201ENST00000439229 848 ntBASIC13.05□□□□□ -0.32
CLK1P49759 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.05□□□□□ -0.32
CLK1P49759 AC004898.1-201ENST00000451057 766 ntBASIC13.05□□□□□ -0.32
CLK1P49759 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.05□□□□□ -0.32
CLK1P49759 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.05□□□□□ -0.32
CLK1P49759 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.05□□□□□ -0.32
CLK1P49759 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.05□□□□□ -0.32
CLK1P49759 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.05□□□□□ -0.32
CLK1P49759 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.05□□□□□ -0.32
CLK1P49759 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 AC008805.1-201ENST00000590892 364 ntBASIC13.05□□□□□ -0.32
CLK1P49759 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.05□□□□□ -0.32
CLK1P49759 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 AL033527.4-201ENST00000641026 673 ntBASIC13.05□□□□□ -0.32
CLK1P49759 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.05□□□□□ -0.32
CLK1P49759 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CLK1P49759 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLK1P49759 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLK1P49759 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLK1P49759 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLK1P49759 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLK1P49759 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms