Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 METTL26-214ENST00000614890 801 ntTSL 3 BASIC10.68□□□□□ -0.7
CXCL1P09341 AC138466.3-201ENST00000619983 221 ntBASIC10.68□□□□□ -0.7
CXCL1P09341 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 UEVLD-213ENST00000543987 2503 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 ZNF839-209ENST00000559185 2905 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 MPP4-204ENST00000409143 2082 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 PMS2-201ENST00000265849 2855 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 SDR16C5-203ENST00000522671 1988 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 LINC00893-215ENST00000618757 2347 ntTSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 CNGA3-203ENST00000393504 3841 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
CXCL1P09341 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CXCL1P09341 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 CEP89-207ENST00000591863 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
CXCL1P09341 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 AP000593.2-201ENST00000542775 1433 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 ALK-205ENST00000618119 4646 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 ZNF23-201ENST00000357254 3186 ntAPPRIS P3 TSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 SNX12-207ENST00000622277 2422 ntAPPRIS P3 TSL 4 BASIC10.67□□□□□ -0.7
CXCL1P09341 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 CSPG4P13-202ENST00000567704 4801 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 DUSP16-201ENST00000228862 3402 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 VWCE-208ENST00000613271 3032 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
CXCL1P09341 AC092902.5-201ENST00000641650 3256 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 AL021392.1-201ENST00000426112 2949 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 MIR943-201ENST00000401286 94 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 POM121L8P-201ENST00000417732 1281 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC10.67□□□□□ -0.7
CXCL1P09341 POM121L9P-203ENST00000441984 1285 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 AC022137.2-201ENST00000503482 481 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 CDC23-208ENST00000505120 455 ntTSL 3 BASIC10.67□□□□□ -0.7
CXCL1P09341 FADS2-205ENST00000517839 469 ntTSL 3 BASIC10.67□□□□□ -0.7
CXCL1P09341 AC068587.3-201ENST00000526613 355 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC10.67□□□□□ -0.7
CXCL1P09341 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC10.67□□□□□ -0.7
CXCL1P09341 RNA5-8SN1-201ENST00000610460 153 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 RNA5-8SN5-202ENST00000612463 153 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 RNA5-8SN4-201ENST00000613359 153 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 RNA5-8SN5-201ENST00000619471 153 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 AC134684.3-201ENST00000641758 218 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
CXCL1P09341 TIAM2-201ENST00000275246 2491 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 CICP7-201ENST00000432723 2477 ntBASIC10.67□□□□□ -0.7
CXCL1P09341 RAB3IP-201ENST00000247833 3690 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 HECW1-IT1-201ENST00000322220 1839 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 OAS1-208ENST00000551241 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 FGF11-202ENST00000572907 2358 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 DPF2-202ENST00000415073 2085 ntTSL 2 BASIC10.67□□□□□ -0.7
CXCL1P09341 AGK-201ENST00000355413 3849 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 ARL4A-203ENST00000396663 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 FBXO9-202ENST00000323557 3418 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CXCL1P09341 KIAA0319-205ENST00000543707 5314 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 TESK2-202ENST00000372086 3074 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 NTRK3-204ENST00000360948 3004 ntTSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC10.66□□□□□ -0.7
CXCL1P09341 KLHL23-202ENST00000392647 4077 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 PNPO-217ENST00000642017 3465 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CXCL1P09341 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ARHGAP25-201ENST00000409030 2936 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 ARHGAP25-203ENST00000409220 2939 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CXCL1P09341 RAB43-204ENST00000393307 4203 ntAPPRIS P1 TSL 4 BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 148.3 ms