RNA–Protein interactions for RNA: ENST00000567704.5

CSPG4P13-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

BASIC

Gene CSPG4P13, Length 4,801 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-202ENST00000567704 NISCHQ9Y2I1 1504 aa21.24■□□□□ 0.99
CSPG4P13-202ENST00000567704 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
CSPG4P13-202ENST00000567704 SUPT5HO00267 1087 aaKnown RBP20.41■□□□□ 0.86
CSPG4P13-202ENST00000567704 SHROOM4Q9ULL8 1493 aa19.92■□□□□ 0.78
CSPG4P13-202ENST00000567704 PCGF6Q9BYE7 350 aa19.81■□□□□ 0.76
CSPG4P13-202ENST00000567704 EHMT2Q96KQ7 1210 aa19.68■□□□□ 0.74
CSPG4P13-202ENST00000567704 PELP1Q8IZL8 1130 aaKnown RBP19.65■□□□□ 0.74
CSPG4P13-202ENST00000567704 CENPBP07199 599 aaPredicted RBP19.32■□□□□ 0.68
CSPG4P13-202ENST00000567704 MYT1Q01538 1121 aa19.28■□□□□ 0.68
CSPG4P13-202ENST00000567704 ZEB1P37275 1124 aaPredicted RBP19.26■□□□□ 0.67
CSPG4P13-202ENST00000567704 FAM9AQ8IZU1 332 aaPredicted RBP19.22■□□□□ 0.67
CSPG4P13-202ENST00000567704 HRCP23327 699 aa19.2■□□□□ 0.66
CSPG4P13-202ENST00000567704 TTBK1Q5TCY1 1321 aaPredicted RBP19.12■□□□□ 0.65
CSPG4P13-202ENST00000567704 CCER1Q8TC90 406 aaPredicted RBP19.05■□□□□ 0.64
CSPG4P13-202ENST00000567704 APLP2Q06481 763 aa18.95■□□□□ 0.62
CSPG4P13-202ENST00000567704 YTHDC1Q96MU7 727 aaKnown RBP18.94■□□□□ 0.62
CSPG4P13-202ENST00000567704 PPARGC1BQ86YN6 1023 aaKnown RBP18.92■□□□□ 0.62
CSPG4P13-202ENST00000567704 ERICH6Q7L0X2 663 aa18.9■□□□□ 0.62
CSPG4P13-202ENST00000567704 TRIM26Q12899 539 aaPredicted RBP18.81■□□□□ 0.6
CSPG4P13-202ENST00000567704 TRIM41Q8WV44 630 aa18.77■□□□□ 0.59
CSPG4P13-202ENST00000567704 LOC105371045A0A1W2PR82 267 aa18.58■□□□□ 0.57
CSPG4P13-202ENST00000567704 NEFLP07196 543 aa18.57■□□□□ 0.56
CSPG4P13-202ENST00000567704 CHIC1Q5VXU3 224 aa18.53■□□□□ 0.56
CSPG4P13-202ENST00000567704 RANGAP1P46060 587 aaPredicted RBP18.52■□□□□ 0.56
CSPG4P13-202ENST00000567704 UBTFP17480 764 aaKnown RBP18.4■□□□□ 0.54
CSPG4P13-202ENST00000567704 DIEXFQ68CQ4 756 aaKnown RBP18.33■□□□□ 0.52
CSPG4P13-202ENST00000567704 GTF3C3Q9Y5Q9 886 aa18.32■□□□□ 0.52
CSPG4P13-202ENST00000567704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.27■□□□□ 0.51
CSPG4P13-202ENST00000567704 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
CSPG4P13-202ENST00000567704 ABCC9O60706 1549 aa18.22■□□□□ 0.51
CSPG4P13-202ENST00000567704 ATP1B4Q9UN42 357 aaPredicted RBP18.12■□□□□ 0.49
CSPG4P13-202ENST00000567704 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
CSPG4P13-202ENST00000567704 ACIN1Q9UKV3 1341 aaKnown RBP18.09■□□□□ 0.49
CSPG4P13-202ENST00000567704 ITGAEP38570 1179 aa17.96■□□□□ 0.47
CSPG4P13-202ENST00000567704 BCANQ96GW7 911 aa17.93■□□□□ 0.46
CSPG4P13-202ENST00000567704 DAXXQ9UER7 740 aaPredicted RBP17.86■□□□□ 0.45
CSPG4P13-202ENST00000567704 SCAF1Q9H7N4 1312 aaKnown RBP17.85■□□□□ 0.45
CSPG4P13-202ENST00000567704 RTL5Q5HYW3 569 aaPredicted RBP17.84■□□□□ 0.45
CSPG4P13-202ENST00000567704 ZNF316A6NFI3 1004 aaPredicted RBP17.8■□□□□ 0.44
CSPG4P13-202ENST00000567704 NEUROD1Q13562 356 aa17.76■□□□□ 0.43
CSPG4P13-202ENST00000567704 CNGB1Q14028 1251 aaPredicted RBP17.74■□□□□ 0.43
CSPG4P13-202ENST00000567704 POLR3GLQ9BT43 218 aa17.73■□□□□ 0.43
CSPG4P13-202ENST00000567704 ZCCHC6Q5VYS8 1495 aaKnown RBP17.67■□□□□ 0.42
CSPG4P13-202ENST00000567704 CDK11AQ9UQ88 783 aaPredicted RBP17.61■□□□□ 0.41
CSPG4P13-202ENST00000567704 DCAF1Q9Y4B6 1507 aa17.51■□□□□ 0.39
CSPG4P13-202ENST00000567704 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
CSPG4P13-202ENST00000567704 ANP32CO43423 234 aa17.48■□□□□ 0.39
CSPG4P13-202ENST00000567704 RB1CC1Q8TDY2 1594 aa17.45■□□□□ 0.38
CSPG4P13-202ENST00000567704 FKBP8Q14318 412 aa17.44■□□□□ 0.38
CSPG4P13-202ENST00000567704 CLSPNQ9HAW4 1339 aa17.41■□□□□ 0.38
CSPG4P13-202ENST00000567704 NACADO15069 1562 aa17.4■□□□□ 0.38
CSPG4P13-202ENST00000567704 FAM50AQ14320 339 aaKnown RBP17.38■□□□□ 0.37
CSPG4P13-202ENST00000567704 MIER1Q8N108 512 aa17.32■□□□□ 0.36
CSPG4P13-202ENST00000567704 SCRIBQ14160 1630 aa17.3■□□□□ 0.36
CSPG4P13-202ENST00000567704 EIF5BO60841 1220 aaKnown RBP17.29■□□□□ 0.36
CSPG4P13-202ENST00000567704 ANP32AP39687 249 aaKnown RBP17.28■□□□□ 0.36
CSPG4P13-202ENST00000567704 MYO15BQ96JP2 1530 aa17.25■□□□□ 0.35
CSPG4P13-202ENST00000567704 NPM2Q86SE8 214 aaKnown RBP17.21■□□□□ 0.35
CSPG4P13-202ENST00000567704 TRIM52Q96A61 297 aa17.21■□□□□ 0.35
CSPG4P13-202ENST00000567704 ANP32EQ9BTT0 268 aa17.2■□□□□ 0.34
CSPG4P13-202ENST00000567704 NBR1Q14596 966 aa17.17■□□□□ 0.34
CSPG4P13-202ENST00000567704 MYT1LQ9UL68 1186 aa17.16■□□□□ 0.34
CSPG4P13-202ENST00000567704 DDX10Q13206 875 aaKnown RBP17.16■□□□□ 0.34
CSPG4P13-202ENST00000567704 HNRNPUQ00839 825 aaKnown RBP eCLIP17.12■□□□□ 0.33
CSPG4P13-202ENST00000567704 CSRNP3Q8WYN3 585 aa17.12■□□□□ 0.33
CSPG4P13-202ENST00000567704 ZNF326Q5BKZ1 582 aaKnown RBP17.08■□□□□ 0.33
CSPG4P13-202ENST00000567704 SLC4A1APQ9BWU0 796 aaKnown RBP17.03■□□□□ 0.32
CSPG4P13-202ENST00000567704 IRX6P78412 446 aaPredicted RBP17.02■□□□□ 0.32
CSPG4P13-202ENST00000567704 ZBTB47Q9UFB7 747 aaPredicted RBP17.01■□□□□ 0.31
CSPG4P13-202ENST00000567704 BCL11AQ9H165 835 aa17■□□□□ 0.31
CSPG4P13-202ENST00000567704 FAM9BQ8IZU0 186 aa16.98■□□□□ 0.31
CSPG4P13-202ENST00000567704 CCDC136Q96JN2 1154 aa16.93■□□□□ 0.3
CSPG4P13-202ENST00000567704 SUPT16HQ9Y5B9 1047 aaKnown RBP16.91■□□□□ 0.3
CSPG4P13-202ENST00000567704 GLIPR1L2Q4G1C9 344 aa16.9■□□□□ 0.3
CSPG4P13-202ENST00000567704 HIRIP3Q9BW71 556 aaPredicted RBP16.88■□□□□ 0.29
CSPG4P13-202ENST00000567704 TONSLQ96HA7 1378 aa16.87■□□□□ 0.29
CSPG4P13-202ENST00000567704 CANXP27824 592 aaKnown RBP16.87■□□□□ 0.29
CSPG4P13-202ENST00000567704 P3H3Q8IVL6 736 aa16.85■□□□□ 0.29
CSPG4P13-202ENST00000567704 SALL2Q9Y467 1007 aaPredicted RBP16.81■□□□□ 0.28
CSPG4P13-202ENST00000567704 ARXQ96QS3 562 aa16.79■□□□□ 0.28
CSPG4P13-202ENST00000567704 MRS2Q9HD23 443 aa16.78■□□□□ 0.28
CSPG4P13-202ENST00000567704 RTN4Q9NQC3 1192 aaKnown RBP16.76■□□□□ 0.27
CSPG4P13-202ENST00000567704 ANP32BQ92688 251 aaKnown RBP16.71■□□□□ 0.26
CSPG4P13-202ENST00000567704 TMC1Q8TDI8 760 aa16.69■□□□□ 0.26
CSPG4P13-202ENST00000567704 RBM19Q9Y4C8 960 aaKnown RBP16.69■□□□□ 0.26
CSPG4P13-202ENST00000567704 UPF2Q9HAU5 1272 aaKnown RBP16.67■□□□□ 0.26
CSPG4P13-202ENST00000567704 ARID3CA6NKF2 412 aa16.66■□□□□ 0.26
CSPG4P13-202ENST00000567704 HSP90AA1P07900 732 aaKnown RBP16.65■□□□□ 0.26
CSPG4P13-202ENST00000567704 DEKP35659 375 aaKnown RBP16.64■□□□□ 0.25
CSPG4P13-202ENST00000567704 TSHZ2Q9NRE2 1034 aa16.64■□□□□ 0.25
CSPG4P13-202ENST00000567704 NOP58Q9Y2X3 529 aaKnown RBP16.63■□□□□ 0.25
CSPG4P13-202ENST00000567704 NEFMP07197 916 aa16.62■□□□□ 0.25
CSPG4P13-202ENST00000567704 BAZ1AQ9NRL2 1556 aaPredicted RBP16.61■□□□□ 0.25
CSPG4P13-202ENST00000567704 CEP162Q5TB80 1403 aa16.6■□□□□ 0.25
CSPG4P13-202ENST00000567704 LAS1LQ9Y4W2 734 aaKnown RBP16.59■□□□□ 0.25
CSPG4P13-202ENST00000567704 SENP3-EIF4A1A0A087X0R7 540 aa16.59■□□□□ 0.25
CSPG4P13-202ENST00000567704 PPP4R2Q9NY27 417 aa16.59■□□□□ 0.25
CSPG4P13-202ENST00000567704 CLIP1P30622 1438 aa16.58■□□□□ 0.24
CSPG4P13-202ENST00000567704 RSF1Q96T23 1441 aaPredicted RBP16.57■□□□□ 0.24
CSPG4P13-202ENST00000567704 B4GALNT3Q6L9W6 998 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms