RNA–Protein interactions for RNA: ENST00000247833.11

RAB3IP-201, Transcript of RAB3A interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB3IP, Length 3,690 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IP-201ENST00000247833 NISCHQ9Y2I1 1504 aa25.1■■□□□ 1.61
RAB3IP-201ENST00000247833 SHROOM4Q9ULL8 1493 aa22.28■■□□□ 1.16
RAB3IP-201ENST00000247833 SUPT5HO00267 1087 aaKnown RBP21.99■■□□□ 1.11
RAB3IP-201ENST00000247833 DCAF8L2P0C7V8 631 aa21.98■■□□□ 1.11
RAB3IP-201ENST00000247833 ZCCHC6Q5VYS8 1495 aaKnown RBP21.14■□□□□ 0.98
RAB3IP-201ENST00000247833 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
RAB3IP-201ENST00000247833 CCDC180Q9P1Z9 1646 aa20.96■□□□□ 0.95
RAB3IP-201ENST00000247833 PCGF6Q9BYE7 350 aa20.75■□□□□ 0.91
RAB3IP-201ENST00000247833 MYO15BQ96JP2 1530 aa20.67■□□□□ 0.9
RAB3IP-201ENST00000247833 LOC105371045A0A1W2PR82 267 aa20.6■□□□□ 0.89
RAB3IP-201ENST00000247833 EHMT2Q96KQ7 1210 aa20.54■□□□□ 0.88
RAB3IP-201ENST00000247833 HRCP23327 699 aa20.45■□□□□ 0.86
RAB3IP-201ENST00000247833 FAM9AQ8IZU1 332 aaPredicted RBP20.45■□□□□ 0.86
RAB3IP-201ENST00000247833 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
RAB3IP-201ENST00000247833 PPARGC1BQ86YN6 1023 aaKnown RBP20.29■□□□□ 0.84
RAB3IP-201ENST00000247833 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
RAB3IP-201ENST00000247833 SCRIBQ14160 1630 aa20.21■□□□□ 0.83
RAB3IP-201ENST00000247833 ABCC9O60706 1549 aa20.17■□□□□ 0.82
RAB3IP-201ENST00000247833 TRIM26Q12899 539 aaPredicted RBP20.06■□□□□ 0.8
RAB3IP-201ENST00000247833 RSF1Q96T23 1441 aaPredicted RBP20.03■□□□□ 0.8
RAB3IP-201ENST00000247833 TTBK1Q5TCY1 1321 aaPredicted RBP19.84■□□□□ 0.77
RAB3IP-201ENST00000247833 RB1CC1Q8TDY2 1594 aa19.79■□□□□ 0.76
RAB3IP-201ENST00000247833 CECR2Q9BXF3 1484 aa19.78■□□□□ 0.76
RAB3IP-201ENST00000247833 ZEB1P37275 1124 aaPredicted RBP19.64■□□□□ 0.73
RAB3IP-201ENST00000247833 MROH2BQ7Z745 1585 aa19.62■□□□□ 0.73
RAB3IP-201ENST00000247833 NACADO15069 1562 aa19.59■□□□□ 0.73
RAB3IP-201ENST00000247833 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
RAB3IP-201ENST00000247833 CCER1Q8TC90 406 aaPredicted RBP19.52■□□□□ 0.72
RAB3IP-201ENST00000247833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.5■□□□□ 0.71
RAB3IP-201ENST00000247833 UBTFP17480 764 aaKnown RBP19.5■□□□□ 0.71
RAB3IP-201ENST00000247833 WIZO95785 1651 aa19.48■□□□□ 0.71
RAB3IP-201ENST00000247833 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
RAB3IP-201ENST00000247833 BAZ1AQ9NRL2 1556 aaPredicted RBP19.29■□□□□ 0.68
RAB3IP-201ENST00000247833 ABCC8Q09428 1581 aa19.25■□□□□ 0.67
RAB3IP-201ENST00000247833 CSRNP3Q8WYN3 585 aa19.21■□□□□ 0.67
RAB3IP-201ENST00000247833 CCDC88BA6NC98 1476 aa19.19■□□□□ 0.66
RAB3IP-201ENST00000247833 SOGA1O94964 1423 aa19.15■□□□□ 0.66
RAB3IP-201ENST00000247833 APLP2Q06481 763 aa19.15■□□□□ 0.66
RAB3IP-201ENST00000247833 HNRNPUL2Q1KMD3 747 aaKnown RBP19.13■□□□□ 0.65
RAB3IP-201ENST00000247833 CEP162Q5TB80 1403 aa19.09■□□□□ 0.65
RAB3IP-201ENST00000247833 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
RAB3IP-201ENST00000247833 SMARCA4P51532 1647 aa19.05■□□□□ 0.64
RAB3IP-201ENST00000247833 DIEXFQ68CQ4 756 aaKnown RBP19.02■□□□□ 0.63
RAB3IP-201ENST00000247833 RUSC2Q8N2Y8 1516 aa19.01■□□□□ 0.63
RAB3IP-201ENST00000247833 SMARCA2P51531 1590 aa18.97■□□□□ 0.63
RAB3IP-201ENST00000247833 TNIKQ9UKE5 1360 aa18.95■□□□□ 0.62
RAB3IP-201ENST00000247833 WRNQ14191 1432 aaPredicted RBP eCLIP18.95■□□□□ 0.62
RAB3IP-201ENST00000247833 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
RAB3IP-201ENST00000247833 YTHDC1Q96MU7 727 aaKnown RBP18.93■□□□□ 0.62
RAB3IP-201ENST00000247833 CENPBP07199 599 aaPredicted RBP18.87■□□□□ 0.61
RAB3IP-201ENST00000247833 GOLGA3Q08378 1498 aa18.86■□□□□ 0.61
RAB3IP-201ENST00000247833 EEA1Q15075 1411 aa18.85■□□□□ 0.61
RAB3IP-201ENST00000247833 EIF4G1Q04637 1599 aaKnown RBP18.82■□□□□ 0.6
RAB3IP-201ENST00000247833 CLIP1P30622 1438 aa18.8■□□□□ 0.6
RAB3IP-201ENST00000247833 NEUROD1Q13562 356 aa18.79■□□□□ 0.6
RAB3IP-201ENST00000247833 BAZ1BQ9UIG0 1483 aaKnown RBP18.79■□□□□ 0.6
RAB3IP-201ENST00000247833 ACIN1Q9UKV3 1341 aaKnown RBP18.77■□□□□ 0.6
RAB3IP-201ENST00000247833 UNC13AQ9UPW8 1703 aa18.77■□□□□ 0.6
RAB3IP-201ENST00000247833 ITGAEP38570 1179 aa18.76■□□□□ 0.59
RAB3IP-201ENST00000247833 ZNF316A6NFI3 1004 aaPredicted RBP18.75■□□□□ 0.59
RAB3IP-201ENST00000247833 GTF3C3Q9Y5Q9 886 aa18.72■□□□□ 0.59
RAB3IP-201ENST00000247833 CEP164Q9UPV0 1460 aa18.72■□□□□ 0.59
RAB3IP-201ENST00000247833 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
RAB3IP-201ENST00000247833 ATP1B4Q9UN42 357 aaPredicted RBP18.67■□□□□ 0.58
RAB3IP-201ENST00000247833 BICRAQ9NZM4 1560 aa18.67■□□□□ 0.58
RAB3IP-201ENST00000247833 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
RAB3IP-201ENST00000247833 SYNJ1O43426 1573 aa18.62■□□□□ 0.57
RAB3IP-201ENST00000247833 PELP1Q8IZL8 1130 aaKnown RBP18.58■□□□□ 0.57
RAB3IP-201ENST00000247833 VPS8Q8N3P4 1428 aa18.57■□□□□ 0.56
RAB3IP-201ENST00000247833 MIER1Q8N108 512 aa18.55■□□□□ 0.56
RAB3IP-201ENST00000247833 KANK4Q5T7N3 995 aaPredicted RBP18.49■□□□□ 0.55
RAB3IP-201ENST00000247833 P3H3Q8IVL6 736 aa18.48■□□□□ 0.55
RAB3IP-201ENST00000247833 PEG3Q9GZU2 1588 aa18.4■□□□□ 0.54
RAB3IP-201ENST00000247833 KIF21BO75037 1637 aa18.4■□□□□ 0.54
RAB3IP-201ENST00000247833 FAM50AQ14320 339 aaKnown RBP18.4■□□□□ 0.54
RAB3IP-201ENST00000247833 KIF27Q86VH2 1401 aa18.39■□□□□ 0.53
RAB3IP-201ENST00000247833 TOP2BQ02880 1626 aa18.28■□□□□ 0.52
RAB3IP-201ENST00000247833 CUX2O14529 1486 aa18.26■□□□□ 0.51
RAB3IP-201ENST00000247833 ARAP1Q96P48 1450 aa18.23■□□□□ 0.51
RAB3IP-201ENST00000247833 CUX1P39880 1505 aa18.22■□□□□ 0.51
RAB3IP-201ENST00000247833 PRXQ9BXM0 1461 aa18.22■□□□□ 0.51
RAB3IP-201ENST00000247833 DHX57Q6P158 1386 aaKnown RBP18.22■□□□□ 0.51
RAB3IP-201ENST00000247833 NCAPD3P42695 1498 aa18.21■□□□□ 0.51
RAB3IP-201ENST00000247833 CCNB3Q8WWL7 1395 aa18.21■□□□□ 0.51
RAB3IP-201ENST00000247833 CARMIL1Q5VZK9 1371 aa18.17■□□□□ 0.5
RAB3IP-201ENST00000247833 HIRIP3Q9BW71 556 aaPredicted RBP18.13■□□□□ 0.49
RAB3IP-201ENST00000247833 ERICH3Q5RHP9 1530 aa18.13■□□□□ 0.49
RAB3IP-201ENST00000247833 CLSPNQ9HAW4 1339 aa18.12■□□□□ 0.49
RAB3IP-201ENST00000247833 CFTRP13569 1480 aa18.12■□□□□ 0.49
RAB3IP-201ENST00000247833 SIN3AQ96ST3 1273 aa18.12■□□□□ 0.49
RAB3IP-201ENST00000247833 IGF1RP08069 1367 aa18.11■□□□□ 0.49
RAB3IP-201ENST00000247833 ARHGAP35Q9NRY4 1499 aa18.1■□□□□ 0.49
RAB3IP-201ENST00000247833 CADPSQ9ULU8 1353 aa18.1■□□□□ 0.49
RAB3IP-201ENST00000247833 DDX10Q13206 875 aaKnown RBP18.08■□□□□ 0.48
RAB3IP-201ENST00000247833 HMGXB3Q12766 1538 aa18.08■□□□□ 0.48
RAB3IP-201ENST00000247833 RAB3GAP2Q9H2M9 1393 aa18.08■□□□□ 0.48
RAB3IP-201ENST00000247833 BIVM-ERCC5R4GMW8 1640 aa18.07■□□□□ 0.48
RAB3IP-201ENST00000247833 ARID3CA6NKF2 412 aa18.05■□□□□ 0.48
RAB3IP-201ENST00000247833 FGD5Q6ZNL6 1462 aa18.03■□□□□ 0.48
RAB3IP-201ENST00000247833 BCANQ96GW7 911 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms