Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
AMBRA1Q9C0C7 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
AMBRA1Q9C0C7 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
AMBRA1Q9C0C7 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 FTO-214ENST00000636218 2227 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 IP6K3-201ENST00000293756 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC091804.1-201ENST00000486888 567 ntBASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 AC106872.11-201ENST00000605838 421 ntBASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 PCBP2-OT1-201ENST00000634357 590 ntBASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 CLGN-201ENST00000325617 3043 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 BRD7P5-201ENST00000299197 1822 ntBASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.92□□□□□ -0.34
AMBRA1Q9C0C7 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 PES1-205ENST00000405677 2708 ntTSL 2 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 AC092028.1-202ENST00000641483 3547 ntBASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 AC092028.1-201ENST00000641781 3540 ntBASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 AC018445.4-201ENST00000624066 2291 ntBASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 TRIM80P-201ENST00000455685 2848 ntBASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
AMBRA1Q9C0C7 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms