Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
FOXA1P55317 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
FOXA1P55317 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA1P55317 AL596276.2-201ENST00000447525 331 ntBASIC13.31□□□□□ -0.28
FOXA1P55317 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA1P55317 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 AC108725.1-201ENST00000495472 409 ntBASIC13.31□□□□□ -0.28
FOXA1P55317 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.31□□□□□ -0.28
FOXA1P55317 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA1P55317 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA1P55317 AC132825.4-202ENST00000578792 434 ntBASIC13.31□□□□□ -0.28
FOXA1P55317 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA1P55317 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA1P55317 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
FOXA1P55317 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 AC104590.1-202ENST00000558368 1921 ntBASIC13.31□□□□□ -0.28
FOXA1P55317 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA1P55317 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC13.3□□□□□ -0.28
FOXA1P55317 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 PCDHB17P-202ENST00000623466 3066 ntBASIC13.3□□□□□ -0.28
FOXA1P55317 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
FOXA1P55317 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
FOXA1P55317 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.3□□□□□ -0.28
FOXA1P55317 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.3□□□□□ -0.28
FOXA1P55317 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC13.3□□□□□ -0.28
FOXA1P55317 AC138649.2-201ENST00000615886 705 ntBASIC13.3□□□□□ -0.28
FOXA1P55317 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA1P55317 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
FOXA1P55317 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.3□□□□□ -0.28
FOXA1P55317 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA1P55317 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC13.29□□□□□ -0.28
FOXA1P55317 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
FOXA1P55317 AL133338.1-201ENST00000565695 1517 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
FOXA1P55317 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA1P55317 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA1P55317 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 BRWD1P1-201ENST00000401091 371 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA1P55317 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA1P55317 AC098934.1-203ENST00000442868 1262 ntBASIC13.29□□□□□ -0.28
FOXA1P55317 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms